RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TCF25Q9BQ70 676 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 TOR3AQ9H497 397 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 CORO2BQ9UQ03 480 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 CLTCQ00610 1675 aaKnown RBP13.68□□□□□ -0.22
COL4A1-201ENST00000375820 PLEKHG4Q58EX7 1191 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 GPR158Q5T848 1215 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 NEK5Q6P3R8 708 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 SMARCD3Q6STE5 483 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 OAFQ86UD1 273 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 ATCAYQ86WG3 371 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 KCT2Q8NC54 265 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 KLHL32Q96NJ5 620 aa13.68□□□□□ -0.22
COL4A1-201ENST00000375820 FSBPO95073 299 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CYP3A4P08684 503 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 WNT3AP56704 352 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 MRPS5P82675 430 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CDK18Q07002 472 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 QPCTQ16769 361 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CPTPQ5TA50 214 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 PRELID2Q8N945 189 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 PIK3C3Q8NEB9 887 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 KBTBD8Q8NFY9 601 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 NKX2-3Q8TAU0 364 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ARMC5Q96C12 935 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 C11orf16Q9NQ32 467 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ARL8BQ9NVJ2 186 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CACNB4O00305 520 aaPredicted RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FPGTO14772 594 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 SMCO1Q147U7 214 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 SLC30A6Q6NXT4 461 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 GPR142Q7Z601 462 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ANKRD46Q86W74 232 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 TMEM161BQ8NDZ6 487 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 OR8D1Q8WZ84 308 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 RNF31Q96EP0 1072 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CIB1Q99828 191 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 UGT2B4P06133 528 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ITGAVP06756 1048 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 GALK1P51570 392 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 EEF1DP3Q658K8 133 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 MEIOBQ8N635 442 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FAM47BQ8NA70 645 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ART4Q93070 314 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 TMEM134Q9H6X4 195 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 AGO3Q9H9G7 860 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 SEMA3GQ9NS98 782 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 GMIPQ9P107 970 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FBXW2Q9UKT8 454 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 KCNE2Q9Y6J6 123 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CNTNAP1P78357 1384 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 H7C0S8 307 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 S100GP29377 79 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ARHGDIBP52566 201 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 MINDY4Q4G0A6 757 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FAM182AQ5T1J6 154 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 OLFML1Q6UWY5 402 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 NANOGNBQ7Z5D8 188 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 ZMIZ2Q8NF64 920 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 OR4K2Q8NGD2 314 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 SMPDL3BQ92485 455 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 MTMR9Q96QG7 549 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 TCF12Q99081 682 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 KCNS3Q9BQ31 491 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 C1QTNF1Q9BXJ1 281 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FAM198AQ9UFP1 575 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 STOML2Q9UJZ1 356 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FBXO5Q9UKT4 447 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 CHD1O14646 1710 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 DDX3YO15523 660 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 RNASEH2AO75792 299 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 MAT2AP31153 395 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 RP9Q8TA86 221 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 P2RY11Q96G91 374 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 GAL3ST4Q96RP7 486 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 COPS8Q99627 209 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 NDRG2Q9UN36 371 aaKnown RBP13.67□□□□□ -0.22
COL4A1-201ENST00000375820 TRAF6Q9Y4K3 522 aa13.67□□□□□ -0.22
COL4A1-201ENST00000375820 FAM172BPA6NC97 362 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 CSH1P0DML2 217 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 CSH2P0DML3 217 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 ELNP15502 786 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 RPS6KA3P51812 740 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 HSPB3Q12988 150 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 SNAPC1Q16533 368 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 ECM1Q16610 540 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 RNF43Q68DV7 783 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 CATSPERGQ6ZRH7 1159 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 SLC9A9Q8IVB4 645 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 CHERPQ8IWX8 916 aaKnown RBP13.66□□□□□ -0.22
COL4A1-201ENST00000375820 GIPC3Q8TF64 312 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 HAS1Q92839 578 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 KLK6Q92876 244 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 FATE1Q969F0 183 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 PTPRJQ12913 1337 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 HCN1O60741 890 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 PSMD10O75832 226 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 SERPINA1P01009 418 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF460Q14592 562 aa13.66□□□□□ -0.22
COL4A1-201ENST00000375820 LSM12Q3MHD2 195 aaKnown RBP13.66□□□□□ -0.22
COL4A1-201ENST00000375820 VPS26BQ4G0F5 336 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms