RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GRHL1Q9NZI5 618 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 POLR3HQ9Y535 204 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CASZ1Q86V15 1759 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 G3V2T6 193 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 AP3D1O14617 1153 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ERAL1O75616 437 aaKnown RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ENO2P09104 434 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 IL12AP29459 219 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 SLC26A3P40879 764 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 SPIBQ01892 262 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 PMF1Q6P1K2 205 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CDH24Q86UP0 819 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ZNF607Q96SK3 696 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CHID1Q9BWS9 393 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 ARHGEF4Q9NR80 690 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 PCDHB1Q9Y5F3 818 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 U3KQV3 271 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 COL1A2P08123 1366 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CNTNAP1P78357 1384 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 IGLV3-22A0A075B6J6 115 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 H3BNX3 289 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 GCATO75600 419 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 KIR3DL1P43629 444 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 MAPK9P45984 424 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CYP4F2P78329 520 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CYP4F3Q08477 520 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 FAM151BQ6UXP7 276 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 SERPINA13PQ6UXR4 307 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-203ENST00000372407 OTOP3Q7RTS5 596 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 GPR142Q7Z601 462 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 COMMD2Q86X83 199 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 MCFD2Q8NI22 146 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 PPTC7Q8NI37 304 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 CAPSLQ8WWF8 208 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 MUC13Q9H3R2 512 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 SSR3Q9UNL2 185 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 COQ4Q9Y3A0 265 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 SQORQ9Y6N5 450 aa11.4□□□□□ -0.58
PTPRF-203ENST00000372407 C1QTNF3-AMACRE9PGA6 284 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 CDH3P22223 829 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 HTR7P34969 479 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 CXCR3P49682 368 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 RALGDSQ12967 914 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 BLMHQ13867 455 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 TIFAQ96CG3 184 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 BTBD9Q96Q07 612 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 FNDC11Q9BVV2 318 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 WDR12Q9GZL7 423 aaKnown RBP11.4□□□□□ -0.59
PTPRF-203ENST00000372407 UNC93B1Q9H1C4 597 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 BRD9Q9H8M2 597 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 TMPRSS4Q9NRS4 437 aa11.4□□□□□ -0.59
PTPRF-203ENST00000372407 EME2A4GXA9 379 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RHOQP17081 205 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ITGAXP20702 1163 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 L1CAMP32004 1257 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ARL2P36404 184 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 MED22Q15528 200 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 PARP15Q460N3 678 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 GPAT3Q53EU6 434 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 LBX2Q6XYB7 198 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TDRD1Q9BXT4 1180 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 GOLGA2P5Q9HBQ8 144 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RAB26Q9ULW5 256 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RIPK3Q9Y572 518 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC182A6NF36 153 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 FOXO6A8MYZ6 492 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 BTBD19C9JJ37 291 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TULP2O00295 520 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CA12O43570 354 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 MGRN1O60291 552 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 SLC25A14O95258 325 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CCNCP24863 283 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 NRG1Q02297 640 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 SMARCB1Q12824 385 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 QPRTQ15274 297 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TARBP2Q15633 366 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 PIGWQ7Z7B1 504 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 DQX1Q8TE96 717 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 PPCDCQ96CD2 204 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 APOLD1Q96LR9 279 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TBATAQ96M53 351 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 KCTD15Q96SI1 283 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 GBA3Q9H227 469 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TAS2R1Q9NYW7 299 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ATXN10Q9UBB4 475 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RAB23Q9ULC3 237 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 OGDHLQ9ULD0 1010 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ASF1AQ9Y294 204 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CRYBG1Q9Y4K1 1723 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 GPR25O00155 361 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 STK16O75716 305 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CD48P09326 243 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 C4BP0C0L5 1744 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CREB1P16220 341 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CAPGP40121 348 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ENPEPQ07075 957 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 TAF10Q12962 218 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 CYP1B1Q16678 543 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 KHDC1Q4VXA5 237 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms