RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 LPOP22079 712 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 GPX3P22352 226 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 RPL26P61254 145 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 KANK2Q63ZY3 851 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 PIANPQ8IYJ0 282 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 TRPC4APQ8TEL6 797 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 BIRC8Q96P09 236 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 CLSTN3Q9BQT9 956 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 AFF4Q9UHB7 1163 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 RNF112Q9ULX5 631 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 ANKRD66B4E2M5 251 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 CD160O95971 181 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 ARF5P84085 180 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 RAD51Q06609 339 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 PTPRNQ16849 979 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 SPATA24Q86W54 205 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 TWIST2Q8WVJ9 160 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 DCUN1D1Q96GG9 259 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 MYRFLQ96LU7 910 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 GPR21Q99679 349 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 KLF16Q9BXK1 252 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 MUC3BQ9H195 1237 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 MRPL40Q9NQ50 206 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 CREBZFQ9NS37 354 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 SPATS2LQ9NUQ6 558 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 OAS3Q9Y6K5 1087 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 C2orf78A6NCI8 922 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 SUPT3HB4E1H0 165 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 MRASO14807 208 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 PIP5K1BO14986 540 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 SUPT3HO75486 399 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 ATP6V0D1P61421 351 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 FOLH1Q04609 750 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 PTPRRQ15256 657 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 TSNQ15631 228 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 C8orf82Q6P1X6 216 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 RNF168Q8IYW5 571 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 CAPNS2Q96L46 248 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 GCNAQ96QF7 691 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 KCNA7Q96RP8 456 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 PKP2Q99959 881 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 CFHR5Q9BXR6 569 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 TUBB1Q9H4B7 451 aa20.73■□□□□ 0.91
CCDC88B-203ENST00000359902 CDC7O00311 574 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 ECI2O75521 394 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 PIM1P11309 404 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 EEF1DP29692 281 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 STX1BP61266 288 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 GEN1Q17RS7 908 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 RARS2Q5T160 578 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 FOXB2Q5VYV0 432 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 PSAPL1Q6NUJ1 521 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 LINGO4Q6UY18 593 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 TICAM1Q8IUC6 712 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 PHYKPLQ8IUZ5 450 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 FBXO39Q8N4B4 442 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 CYP2S1Q96SQ9 504 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 SLC30A3Q99726 388 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 ADGRE3Q9BY15 652 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 PCDHAC1Q9H158 963 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 SPAG4Q9NPE6 437 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 CD300AQ9UGN4 299 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 FKBPLQ9UIM3 349 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 A0A1B0GTL3 188 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 PRORSD1PA6NEY8 169 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 SNAP91O60641 907 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 CLCQ05315 142 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 TRAF2Q12933 501 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 KIAA1841Q6NSI8 718 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 FBXL19Q6PCT2 694 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 LAYNQ6UX15 382 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 HACD2Q6Y1H2 254 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 SLAIN1Q8ND83 568 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 ZNF461Q8TAF7 563 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 FUBP1Q96AE4 644 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 EPS15L1Q9UBC2 864 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 GIMAP2Q9UG22 337 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 CROTQ9UKG9 612 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 SCN5AQ14524 2016 aa20.72■□□□□ 0.91
CCDC88B-203ENST00000359902 OR1I1O60431 355 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 TMCC1O94876 653 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 ABLIM3O94929 683 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 CAPNS1P04632 268 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 MC4RP32245 332 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 GRB7Q14451 532 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 FAM43BQ6ZT52 329 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 IGSF21Q96ID5 467 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 SEZ6LQ9BYH1 1024 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 BPIFA1Q9NP55 256 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 TMEM181Q9P2C4 612 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 C1RP00736 705 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 PKMP14618 531 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 RALGDSQ12967 914 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 LCP2Q13094 533 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 PDK3Q15120 406 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 FBXO48Q5FWF7 155 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 DDIASQ8IXT1 998 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 NKAPQ8N5F7 415 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 EFHBQ8N7U6 833 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 ADCY4Q8NFM4 1077 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms