RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 DYTNA2CJ06 578 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 SGTAO43765 313 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 NR4A1P22736 598 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 DMPKQ09013 629 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 MPP2Q14168 576 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 SNX27Q96L92 541 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 PCDHAC1Q9H158 963 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 PCDHGC4Q9Y5F7 938 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.68□□□□□ -0.22
VCP-201ENST00000358901 UBXN8O00124 270 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 PIGRP01833 764 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 PAX3P23760 479 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 RPS9P46781 194 aaKnown RBP13.68□□□□□ -0.22
VCP-201ENST00000358901 YBEYP58557 167 aaPredicted RBP13.68□□□□□ -0.22
VCP-201ENST00000358901 TSTD2Q5T7W7 516 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 SYPL2Q5VXT5 272 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 SLC47A1Q96FL8 570 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 ALG2Q9H553 416 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 PPM1HQ9ULR3 514 aa13.68□□□□□ -0.22
VCP-201ENST00000358901 CBFA2T3O75081 653 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 MTHFRP42898 656 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 IRF9Q00978 393 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 TAPT1Q6NXT6 567 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 GALNT5Q7Z7M9 940 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 MYDGFQ969H8 173 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 BORCS5Q969J3 196 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CXorf21Q9HAI6 301 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 EBF2Q9HAK2 575 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 EIF2B3Q9NR50 452 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 VPS51Q9UID3 782 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 LYVE1Q9Y5Y7 322 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 SLC25A14O95258 325 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 C22orf31O95567 290 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CDH3P22223 829 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 IL12RB1P42701 662 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 HNRNPDQ14103 355 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 PPP1R15BQ5SWA1 713 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 TMEM63BQ5T3F8 832 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 KLHL17Q6TDP4 642 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 GATAD2AQ86YP4 633 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 HJURPQ8NCD3 748 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 SPPL2BQ8TCT7 592 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 COL26A1Q96A83 441 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CCDC3Q9BQI4 270 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 COQ10BQ9H8M1 238 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 IPPKQ9H8X2 491 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 RRAGCQ9HB90 399 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 HMX1Q9NP08 348 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 PNPLA8Q9NP80 782 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 FBXW11Q9UKB1 542 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 OGDHLQ9ULD0 1010 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 ZNF490Q9ULM2 529 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 PADI3Q9ULW8 664 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 AGRPO00253 132 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 USP2O75604 605 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 C1RP00736 705 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CKMT2P17540 419 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 SGCGQ13326 291 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 DEPDC4Q8N2C3 294 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 KBTBD8Q8NFY9 601 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 STYXQ8WUJ0 223 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CENPNQ96H22 339 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 FAM124BQ9H5Z6 455 aaPredicted RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 MINDY3Q9H8M7 445 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 ENTPD4Q9Y227 616 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 ERGIC3Q9Y282 383 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 GSTK1Q9Y2Q3 226 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 RAI2Q9Y5P3 530 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 TEX264Q9Y6I9 313 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 URB1O60287 2271 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 IFT172Q9UG01 1749 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 PIP5K1BO14986 540 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 KPNA5O15131 536 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 SUV39H1O43463 412 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CLDN11O75508 207 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CDK9P50750 372 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 SP2Q02086 613 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 PARP15Q460N3 678 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 OR7D4Q8NG98 312 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 LMO3Q8TAP4 145 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 PNPT1Q8TCS8 783 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 CAPSLQ8WWF8 208 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 OR52B2Q96RD2 323 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 ACAT2Q9BWD1 397 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 LRTM1Q9HBL6 345 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 MRPL17Q9NRX2 175 aaKnown RBP13.67□□□□□ -0.22
VCP-201ENST00000358901 CLN6Q9NWW5 311 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 CACNG4Q9UBN1 327 aa13.67□□□□□ -0.22
VCP-201ENST00000358901 H3BNX3 289 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 TAF4O00268 1085 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 TNFRSF21O75509 655 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 FTH1P02794 183 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 RPN2P04844 631 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 NCK1P16333 377 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 MAGP20916 626 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 CES1P23141 567 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 ITPKAP23677 461 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 IFNGR2P38484 337 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 THOP1P52888 689 aa13.66□□□□□ -0.22
VCP-201ENST00000358901 ADGRE1Q14246 886 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms