RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PCDHAC1Q9H158 963 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 SEMA6AQ9H2E6 1030 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 ATXN3LQ9H3M9 355 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 RHOJQ9H4E5 214 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 GALNT8Q9NY28 637 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 IPO11Q9UI26 975 aaKnown RBP8.6□□□□□ -1.03
TRIM55-204ENST00000353317 ANKRD6Q9Y2G4 727 aa8.6□□□□□ -1.03
TRIM55-204ENST00000353317 CCDC85CA6NKD9 419 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ERI2A8K979 691 aaKnown RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SLCO1B7G3V0H7 640 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 H3BSA7 217 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 GFRA2O00451 464 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 NCAM2O15394 837 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 LRG1P02750 347 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 BMP1P13497 986 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ARSAP15289 507 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 OR1E1P30953 314 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SLC5A2P31639 672 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 NPY2RP49146 381 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 COG7P83436 770 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SLC12A1Q13621 1099 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 TMEM259Q4ZIN3 620 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 LRRC8EQ6NSJ5 796 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 Q6ZNB5 142 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 GK5Q6ZS86 529 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 LCA5Q86VQ0 697 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SPNS2Q8IVW8 549 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 MFSD6LQ8IWD5 586 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 DENND6AQ8IWF6 608 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 PCDH20Q8N6Y1 951 aaKnown RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CCNYL1Q8N7R7 359 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 VN1R2Q8NFZ6 395 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 EME1Q96AY2 570 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 NXNL1Q96CM4 212 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 MAELQ96JY0 434 aaKnown RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 GPR78Q96P69 363 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 IRAK4Q9NWZ3 460 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ADA2Q9NZK5 511 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 PCDHGA7Q9Y5G6 932 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 RAD54BQ9Y620 910 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SDHDO14521 159 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 MATN3O15232 486 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CACNG3O60359 315 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 TRIOO75962 3097 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CDK4P11802 303 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CDH2P19022 906 aaPredicted RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 HOXD9P28356 352 aaPredicted RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 HTR7P34969 479 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 HADHAP40939 763 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 HSPA13P48723 471 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 PRKAA2P54646 552 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ERVK-21P61565 698 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CTBP1Q13363 440 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 GPM6BQ13491 265 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CBX2Q14781 532 aaPredicted RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 EML3Q32P44 896 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 SH2D4BQ5SQS7 431 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ADGRF1Q5T601 910 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 PDZD4Q76G19 769 aaPredicted RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CHERPQ8IWX8 916 aaKnown RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ATPAF2Q8N5M1 289 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 HMGCLL1Q8TB92 370 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 STON2Q8WXE9 905 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ZNF707Q96C28 371 aaPredicted RBP8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ASB9Q96DX5 294 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 TSNARE1Q96NA8 513 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 EMILIN2Q9BXX0 1053 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 COQ10BQ9H8M1 238 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 ACOT9Q9Y305 439 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 RNF11Q9Y3C5 154 aa8.59□□□□□ -1.03
TRIM55-204ENST00000353317 CARNS1A5YM72 827 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 E7ENX8 843 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 F5H5T6 163 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TRIM38O00635 465 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CD160O95971 181 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 MMP2P08253 660 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 HNRNPLP14866 589 aaKnown RBP eCLIP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PSMC3P17980 439 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CLCN2P51788 898 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NDST2P52849 883 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NR1H2P55055 460 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 MPP1Q00013 466 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CREMQ03060 361 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CDH17Q12864 832 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 SERINC3Q13530 473 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TRIM25Q14258 630 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CYTH1Q15438 398 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TEAD2Q15562 447 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CXorf57Q6NSI4 855 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 BORAQ6PGQ7 559 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 KDELC2Q7Z4H8 507 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 ITIH5Q86UX2 942 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 BBS7Q8IWZ6 715 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PELI3Q8N2H9 469 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 LZTR1Q8N653 840 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 GRIN3AQ8TCU5 1115 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 LRTOMTQ8WZ04 291 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PLD4Q96BZ4 506 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 SGF29Q96ES7 293 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 KIFC1Q9BW19 673 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms