RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 DSC1Q08554 894 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 MAPRE1Q15691 268 aaKnown RBP15.84■□□□□ 0.13
HMGA1-202ENST00000347617 CYBRD1Q53TN4 286 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 DEPDC1Q5TB30 811 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 PKN3Q6P5Z2 889 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 FAM171BQ6P995 826 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 GALNT18Q6P9A2 607 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 KIAA0408Q6ZU52 694 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 LARP4Q71RC2 724 aaKnown RBP eCLIP15.84■□□□□ 0.136e-11■□□□□ 11.3
HMGA1-202ENST00000347617 TFAP2DQ7Z6R9 452 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 PIGZQ86VD9 579 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 PTRH1Q86Y79 214 aaKnown RBP15.84■□□□□ 0.13
HMGA1-202ENST00000347617 PYROXD2Q8N2H3 581 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 ACVR1CQ8NER5 493 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 NTAN1Q96AB6 310 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 TAMM41Q96BW9 452 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 MLPHQ9BV36 600 aaPredicted RBP15.84■□□□□ 0.13
HMGA1-202ENST00000347617 B3GNT5Q9BYG0 378 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 TRIM54Q9BYV2 358 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 NANOGQ9H9S0 305 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 CHRAC1Q9NRG0 131 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 SPATA7Q9P0W8 599 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 OAZ3Q9UMX2 235 aa15.84■□□□□ 0.13
HMGA1-202ENST00000347617 TDRD15B5MCY1 1934 aaKnown RBP15.83■□□□□ 0.13
HMGA1-202ENST00000347617 NME4O00746 187 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 AQP9O43315 295 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 HCRTO43612 131 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 MATN4O95460 622 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 LDLRP01130 860 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 AHSGP02765 367 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 GPX3P22352 226 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 GSTM2P28161 218 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 NMBRP28336 390 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 TKTP29401 623 aaKnown RBP15.83■□□□□ 0.12
HMGA1-202ENST00000347617 EPS8Q12929 822 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 ITGADQ13349 1161 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 TOP3AQ13472 1001 aaPredicted RBP15.83■□□□□ 0.12
HMGA1-202ENST00000347617 TECRLQ5HYJ1 363 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 NOMO2Q5JPE7 1267 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 KIAA0319Q5VV43 1072 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 IGFN1Q86VF2 1251 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 CMTR2Q8IYT2 770 aaKnown RBP15.83■□□□□ 0.12
HMGA1-202ENST00000347617 THEM5Q8N1Q8 247 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 SCML4Q8N228 414 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 RNF169Q8NCN4 708 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 HDAC10Q969S8 669 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 NT5C3BQ969T7 300 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 LPIN3Q9BQK8 851 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 HEPHQ9BQS7 1158 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 BEGAINQ9BUH8 593 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 YIPF2Q9BWQ6 316 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 CEP41Q9BYV8 373 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 CSNK1G1Q9HCP0 422 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 CRTAC1Q9NQ79 661 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 DAPK2Q9UIK4 370 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 ANAPC2Q9UJX6 822 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 CPQQ9Y646 472 aa15.83■□□□□ 0.12
HMGA1-202ENST00000347617 KRBA1A5PL33 1030 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ANGPT2O15123 496 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ALBP02768 609 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 NTRK1P04629 796 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 SCAPQ12770 1279 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 SMAD1Q15797 465 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 NEDD8Q15843 81 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 AGAP7PQ5VUJ5 663 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 CLEC20AQ6ZU45 233 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 CYP2U1Q7Z449 544 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 FAM131BQ86XD5 332 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ZC3H7AQ8IWR0 971 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 PARP8Q8N3A8 854 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 PPHLN1Q8NEY8 458 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 LINC01599Q8WXQ3 324 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 BDH2Q9BUT1 245 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 OSBPL2Q9H1P3 480 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 PCDHB8Q9UN66 801 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 AAR2Q9Y312 384 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 TSC22D4Q9Y3Q8 395 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 TRAF6Q9Y4K3 522 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 TSC2P49815 1807 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 C1orf232A0A0U1RR37 186 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 EI24O14681 340 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ARPC2O15144 300 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ZBTB24O43167 697 aaPredicted RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 USP12O75317 370 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 VPS4BO75351 444 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 HPRP00739 348 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 ZNF182P17025 639 aaPredicted RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 SAT1P21673 171 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 IGFBP6P24592 240 aaPredicted RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 EEF1DP29692 281 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 SLC26A3P40879 764 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 RXRGP48443 463 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 MRPL19P49406 292 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 SKIV2LQ15477 1246 aaKnown RBP15.82■□□□□ 0.12
HMGA1-202ENST00000347617 RAB41Q5JT25 222 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 DEFB106AQ8N104 65 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 MIER2Q8N344 545 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 STARD8Q92502 1023 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 L3HYPDHQ96EM0 354 aa15.82■□□□□ 0.12
HMGA1-202ENST00000347617 VMP1Q96GC9 406 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms