RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CNGA2Q16280 664 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 TCTE1Q5JU00 501 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 TMEM220Q6QAJ8 160 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CAMK1DQ8IU85 385 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 SAMD14Q8IZD0 417 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 TATDN2Q93075 761 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 C12orf65Q9H3J6 166 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 LRRC40Q9H9A6 602 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 GLOD4Q9HC38 313 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 LOXL2Q9Y4K0 774 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 PAPPAQ13219 1627 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 O00370 1275 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 MID1O15344 667 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 C1SP09871 688 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 FOXN2P32314 431 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CCNFP41002 786 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ESCO2Q56NI9 601 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ABHD13Q7L211 337 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 RBFAQ8N0V3 343 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CMASQ8NFW8 434 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 OR10H5Q8NGA6 315 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ANKS1AQ92625 1134 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ELAC2Q9BQ52 826 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 VCX3AQ9NNX9 186 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 MBD1Q9UIS9 605 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 KCNK6Q9Y257 313 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF451Q9Y4E5 1061 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ARIH1Q9Y4X5 557 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 GLYATL1P3A0A0U1RQE8 302 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CCNT2O60583 730 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 PAGE1O75459 146 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 E2F6O75461 281 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 IL12RB1P42701 662 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 BTKQ06187 659 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 IFI44Q8TCB0 444 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 PCED1BQ96HM7 432 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 NAPGQ99747 312 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 FZD3Q9NPG1 666 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 IL17RBQ9NRM6 502 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 POLG2Q9UHN1 485 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 UBFD1O14562 309 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 MSI1O43347 362 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CLIC3O95833 236 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 GOT1P17174 413 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 SPRP35270 261 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ARCN1P48444 511 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 INPP1P49441 399 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CLCNKAP51800 687 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 ITFG1Q8TB96 612 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CKAP2Q8WWK9 683 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 SLC30A2Q9BRI3 323 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 MRPS30Q9NP92 439 aaKnown RBP8.38□□□□□ -1.07
HMGB1-203ENST00000341423 SH3BP4Q9P0V3 963 aa8.38□□□□□ -1.07
HMGB1-203ENST00000341423 CCRL2O00421 344 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 FSCN2O14926 492 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 LRP3O75074 770 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MT-CYBP00156 380 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 SKILP12757 684 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MYF5P13349 255 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ARSAP15289 507 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 TTPAP49638 278 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ALDH6A1Q02252 535 aaKnown RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 IL10RAQ13651 578 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 NPAS3Q8IXF0 933 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DNAJC5GQ8N7S2 189 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 OR2AP1Q8NGE2 309 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 GATAD2BQ8WXI9 593 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 PNPLA2Q96AD5 504 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 SLC39A3Q9BRY0 314 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DNAAF2Q9NVR5 837 aaKnown RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 GID8Q9NWU2 228 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 FBXW11Q9UKB1 542 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 FCF1Q9Y324 198 aaKnown RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 RCCD1A6NED2 376 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 GRID2O43424 1007 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 CILPO75339 1184 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 TUBB4AP04350 444 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 HSD17B3P37058 310 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 GPS1Q13098 491 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MORF4L2Q15014 288 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 NFIL3Q16649 462 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ZMIZ2Q8NF64 920 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DCAKDQ8WVC6 231 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 CEP295NLQ96MC4 621 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF559Q9BR84 538 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 PREBQ9HCU5 417 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 POLE4Q9NR33 117 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 VPS18Q9P253 973 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ZC3H7BQ9UGR2 993 aaKnown RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 SLIT3O75094 1523 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 NR2C1P13056 603 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 TSHRP16473 764 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 TCP1P17987 556 aaKnown RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MGAT1P26572 445 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MBTD1Q05BQ5 628 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 NSDHLQ15738 373 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 BTBD16Q32M84 506 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 HES3Q5TGS1 186 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ACSM2BQ68CK6 577 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms