RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CR2P20023 1033 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 HNRNPH3P31942 346 aaKnown RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 VIPR1P32241 457 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 PCK1P35558 622 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 HSPA9P38646 679 aaKnown RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 LIMK2P53671 638 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CYP4F2P78329 520 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CDK3Q00526 305 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 SLC10A7Q0GE19 358 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 BIRC2Q13490 618 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CNGA3Q16281 694 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 SKOR2Q2VWA4 1001 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 PPP6R3Q5H9R7 873 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CPNE8Q86YQ8 564 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 AGBL5Q8NDL9 886 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CCDC112Q8NEF3 446 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 OR4D9Q8NGE8 314 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 DTD2Q96FN9 168 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CCDC74BQ96LY2 380 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 DDA1Q9BW61 102 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 MRPL47Q9HD33 250 aaKnown RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 ETNK2Q9NVF9 386 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 PHTF1Q9UMS5 762 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 SLC17A4Q9Y2C5 497 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 UBR5O95071 2799 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 PPM1DO15297 605 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 RARAP10276 462 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 CYP2A6P11509 494 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 AK4P27144 223 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 CSTF2P33240 577 aaKnown RBP eCLIP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 GNPDA1P46926 289 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 ARSDP51689 593 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 SLC25A11Q02978 314 aaKnown RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 CLCA4Q14CN2 919 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 DPYSL2Q16555 572 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 SMTNL2Q2TAL5 461 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 ASTE1Q2TB18 679 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 RALGPS1Q5JS13 557 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 ALKBH5Q6P6C2 394 aaKnown RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 BORAQ6PGQ7 559 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 POLNQ7Z5Q5 900 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 NAGSQ8N159 534 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 NIPA2Q8N8Q9 360 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 RCBTB1Q8NDN9 531 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 IQCDQ96DY2 449 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 SCARF2Q96GP6 870 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-212ENST00000597995 NUDCD1Q96RS6 583 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 NUP85Q9BW27 656 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 ASPSCR1Q9BZE9 553 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 TUBD1Q9UJT1 453 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 SUFUQ9UMX1 484 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 PCDHGC4Q9Y5F7 938 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 PTPN13Q12923 2485 aa12.48□□□□□ -0.41
TRIM28-212ENST00000597995 BSNQ9UPA5 3926 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 IGHV1OR21-1A0A087WYE8 117 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 B4E171 279 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 CAPN5O15484 640 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-212ENST00000597995 CPP00450 1065 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 THRAP10827 490 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 AMPD1P23109 780 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 IL4RP24394 825 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 UGT1A3P35503 534 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 ADCY8P40145 1251 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 TSPAN7P41732 249 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 GPLD1P80108 840 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 CTBSQ01459 385 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 DPTQ07507 201 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 PIGHQ14442 188 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-212ENST00000597995 ZNF235Q14590 738 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 NFKBIBQ15653 356 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 CCDC122Q5T0U0 273 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 SLC30A9Q6PML9 568 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 Q6ZVL8 140 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 HSD11B1LQ7Z5J1 315 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 NLRP8Q86W28 1048 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 BBS5Q8N3I7 341 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 IL22RA1Q8N6P7 574 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 JPH3Q8WXH2 748 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-212ENST00000597995 HSPH1Q92598 858 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 SCRN2Q96FV2 425 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 CATSPER2Q96P56 530 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 MGME1Q9BQP7 344 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 PACSIN1Q9BY11 444 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 SUDS3Q9H7L9 328 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-212ENST00000597995 ZWILCHQ9H900 591 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 ANAPC7Q9UJX3 599 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 PPIL1Q9Y3C6 166 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 ST14Q9Y5Y6 855 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 B3GALT1Q9Y5Z6 326 aa12.47□□□□□ -0.41
TRIM28-212ENST00000597995 TTC24A2A3L6 582 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PEX11BO96011 259 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 LHCGRP22888 699 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 ETV3P41162 512 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 POLD2P49005 469 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 RAB15P59190 212 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 TLE1Q04724 770 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 SRSF1Q07955 248 aaKnown RBP eCLIP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 ATP13A4Q4VNC1 1196 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 BOLA3Q53S33 107 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 COLEC12Q5KU26 742 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms