RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HEY1Q9Y5J3 304 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 PCYT1BQ9Y5K3 369 aaPredicted RBP14.82□□□□□ -0.04
CLN3-213ENST00000565047 IGSF10Q6WRI0 2623 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 CDRT15L2A8MXV6 281 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 ANKRD66B4E2M5 251 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 CD86P42081 329 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 NR1D2Q14995 579 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 C14orf28Q4W4Y0 310 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 HENMT1Q5T8I9 393 aaKnown RBP14.81□□□□□ -0.04
CLN3-213ENST00000565047 RAET1GQ6H3X3 334 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 ZNF438Q7Z4V0 828 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 LSMEM2Q8N112 164 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 NDUFAF2Q8N183 169 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 FAM46DQ8NEK8 389 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 LPCAT1Q8NF37 534 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 AP2M1Q96CW1 435 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 DCBLD2Q96PD2 775 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 BBC3Q96PG8 261 aaPredicted RBP14.81□□□□□ -0.04
CLN3-213ENST00000565047 GOLPH3Q9H4A6 298 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 CARS2Q9HA77 564 aaKnown RBP14.81□□□□□ -0.04
CLN3-213ENST00000565047 DDX56Q9NY93 547 aaKnown RBP14.81□□□□□ -0.04
CLN3-213ENST00000565047 SAE1Q9UBE0 346 aaPredicted RBP14.81□□□□□ -0.04
CLN3-213ENST00000565047 RNF215Q9Y6U7 377 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 BPTFQ12830 3046 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 CACNA1GO43497 2377 aa14.81□□□□□ -0.04
CLN3-213ENST00000565047 NUDT21O43809 227 aaKnown RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 KRT1P04264 644 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 ZFXP17010 805 aaPredicted RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 AK4P27144 223 aaPredicted RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 MAGEA1P43355 309 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 ABCG1P45844 678 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 NOP2P46087 812 aaKnown RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 GPR1P46091 355 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 SPINT3P49223 89 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 B4GALNT1Q00973 533 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 CTBSQ01459 385 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TLE3Q04726 772 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 ZFP36L1Q07352 338 aaKnown RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 PDK1Q15118 436 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 PRKD1Q15139 912 aaPredicted RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 PYCR3Q53H96 274 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 SOWAHCQ53LP3 525 aaPredicted RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 B4GALNT4Q76KP1 1039 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TMPRSS9Q7Z410 1059 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 CCDC170Q8IYT3 715 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 LIN37Q96GY3 246 aaPredicted RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 RIOK2Q9BVS4 552 aaKnown RBP14.8□□□□□ -0.04
CLN3-213ENST00000565047 CEP41Q9BYV8 373 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TRIM5Q9C035 493 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 BRD8Q9H0E9 1235 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 RBSNQ9H1K0 784 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 LRRN3Q9H3W5 708 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TAAR2Q9P1P5 351 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 LRIT1Q9P2V4 623 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 DNPEPQ9ULA0 475 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TMEM98Q9Y2Y6 226 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 PLEKHM1Q9Y4G2 1056 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 TTLL3Q9Y4R7 772 aa14.8□□□□□ -0.04
CLN3-213ENST00000565047 A0A0A6YYK5 440 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 FADS2P1A8MWK0 482 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 D6RAR5 112 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 B4GAT1O43505 415 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 PSTPIP1O43586 416 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 DNAJC6O75061 913 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 RPLP0P05388 317 aaKnown RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 KRT10P13645 584 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 PECAM1P16284 738 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 CCKBRP32239 447 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 CD68P34810 354 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 ADCY8P40145 1251 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 GNPDA1P46926 289 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 MARCKSL1P49006 195 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 NR2C2P49116 596 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 EPHB1P54762 984 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 AP1B1Q10567 949 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 WASHC5Q12768 1159 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 SPIDRQ14159 915 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 SLC14A2Q15849 920 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 TEX44Q53QW1 395 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 C3orf38Q5JPI3 329 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 ZFYVE27Q5T4F4 411 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 SPRED1Q7Z699 444 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 CLEC14AQ86T13 490 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 TRIM74Q86UV6 250 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 CCNJLQ8IV13 435 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 SPACA3Q8IXA5 215 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 NAGSQ8N159 534 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 EXD1Q8NHP7 514 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 ZNF830Q96NB3 372 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 ARHGEF17Q96PE2 2063 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 MLPHQ9BV36 600 aaPredicted RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 MAK16Q9BXY0 300 aaKnown RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 SLC25A51Q9H1U9 297 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 DPEP2Q9H4A9 486 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 HAUS2Q9NVX0 235 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 PCDHA13Q9Y5I0 950 aa14.79□□□□□ -0.04
CLN3-213ENST00000565047 OAS3Q9Y6K5 1087 aaKnown RBP14.79□□□□□ -0.04
CLN3-213ENST00000565047 RGSL1A5PLK6 1076 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 RCCD1A6NED2 376 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 B4DGG1 531 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms