RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 MAN2A2P49641 1150 aa13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 SLC25A3Q00325 362 aa13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 CSTF1Q05048 431 aaKnown RBP13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF268Q14587 947 aaPredicted RBP13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 TAPT1Q6NXT6 567 aa13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 TIGD4Q8IY51 512 aa13.83□□□□□ -0.2
CSPG4P12-202ENST00000559989 RHPN2P1A8MT19 583 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 UNC5CO95185 931 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 RAET1GQ6H3X3 334 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ARSKQ6UWY0 536 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 LAPTM4BQ86VI4 370 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PSTKQ8IV42 348 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 DENND1CQ8IV53 801 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SEMA4AQ9H3S1 761 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 TFR2Q9UP52 801 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 FFAR3O14843 346 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 GPR42O15529 346 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PEX11AO75192 247 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 UROSP10746 265 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 TBX2Q13207 712 aaPredicted RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 CDK10Q15131 360 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 CES3Q6UWW8 571 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF627Q7L945 461 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 KCNK18Q7Z418 384 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ADGRG6Q86SQ4 1221 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SLC44A3Q8N4M1 653 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 GIMAP5Q96F15 307 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 MTMR4Q9NYA4 1195 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PDP1Q9P0J1 537 aaPredicted RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SLC16A8O95907 504 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 YES1P07947 543 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SCGB2A2Q13296 93 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 UBAP2LQ14157 1087 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF792Q3KQV3 632 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ACTL9Q8TC94 416 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 COQ8BQ96D53 544 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 CPNE2Q96FN4 548 aaPredicted RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 LPIN3Q9BQK8 851 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 NUDT15Q9NV35 164 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SPATA7Q9P0W8 599 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PCDHGB1Q9Y5G3 927 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PNPLA7Q6ZV29 1317 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF20P17024 532 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 OR2B6P58173 313 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 DCDC1P59894 354 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PRKG2Q13237 762 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 DMRTB1Q96MA1 342 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZSWIM3Q96MP5 696 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 TBCBQ99426 244 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF649Q9BS31 505 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ASB8Q9H765 288 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 NINJ2Q9NZG7 142 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 FAM228BP0C875 321 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PEPDP12955 493 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 ACSL1P33121 698 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 RPL21P46778 160 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 GDI2P50395 445 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 FAM153CQ494X1 144 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 MTX3Q5HYI7 312 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SPIN3Q5JUX0 258 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 METTL21CQ5VZV1 264 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 NYAP1Q6ZVC0 841 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PARGQ86W56 976 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 LIN37Q96GY3 246 aaPredicted RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 NXF3Q9H4D5 531 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 BRD9Q9H8M2 597 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 WASF3Q9UPY6 502 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 A8MX80 341 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 SLC22A3O75751 556 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 YBX3P16989 372 aaKnown RBP eCLIP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 CYP2B6P20813 491 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 GRK1Q15835 563 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 DCST1Q5T197 706 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 METTL3Q86U44 580 aaKnown RBP13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 PIGXQ8TBF5 258 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 NDNQ99608 321 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 DNMT3LQ9UJW3 386 aa13.82□□□□□ -0.2
CSPG4P12-202ENST00000559989 GSG1L2A8MUP6 293 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 FABP3P05413 133 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 FAM86B2P0C5J1 330 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 PAX3P23760 479 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 ATP13A3Q9H7F0 1226 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 RCOR3Q9P2K3 495 aaPredicted RBP13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 SNCAIPQ9Y6H5 919 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 MOXD2PA6NHM9 499 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 PPP1R3GB7ZBB8 358 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 SCGB2A1O75556 95 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 PET100P0DJ07 73 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 CETPP11597 493 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 HTR1BP28222 390 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 RAB15P59190 212 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF844Q08AG5 666 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 GPR65Q8IYL9 337 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 ZNF366Q8N895 744 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 DNASE1L2Q92874 299 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 EHD4Q9H223 541 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 RNF121Q9H920 327 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 GLS2Q9UI32 602 aa13.81□□□□□ -0.2
CSPG4P12-202ENST00000559989 GRIN2DO15399 1336 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms