RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 XYLT2Q9H1B5 865 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 EIF2B3Q9NR50 452 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 INTS10Q9NVR2 710 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 DPP3Q9NY33 737 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ANKRD6Q9Y2G4 727 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 DERAQ9Y315 318 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 GPD2P43304 727 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 LIMK2P53671 638 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 BCAR1P56945 870 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ARL13AQ5H913 290 aaPredicted RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 CYP4A22Q5TCH4 519 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TMEM198Q66K66 360 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TUBA3EQ6PEY2 450 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TMC5Q6UXY8 1006 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SLCO6A1Q86UG4 719 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 DDIASQ8IXT1 998 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SIMC1Q8NDZ2 872 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TRPV3Q8NET8 790 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 JOSD2Q8TAC2 188 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 MYRFLQ96LU7 910 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 RBBP8Q99708 897 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ADAM2Q99965 735 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 FUNDC2Q9BWH2 189 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SNX25Q9H3E2 840 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 KLQ9UEF7 1012 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 PCSK1NQ9UHG2 260 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ZNF639Q9UID6 485 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 OAZ3Q9UMX2 235 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ITM2BQ9Y287 266 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SCN5AQ14524 2016 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 WDR27A2RRH5 827 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 AURKAO14965 403 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HOXC11O43248 304 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 MAN1A2O60476 641 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 SYNCRIPO60506 623 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 PTTG1O95997 202 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 KRT8P05787 483 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 CHRNGP07510 517 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 SNRPB2P08579 225 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 GRIA4P48058 902 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ECT2LQ008S8 904 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 AQP6Q13520 282 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ZBTB6Q15916 424 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HIST2H2ACQ16777 129 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 ZNF181Q2M3W8 571 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 XKR4Q5GH76 650 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 SPANXN3Q5MJ09 141 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 KCNT2Q6UVM3 1135 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 GK5Q6ZS86 529 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 SLC16A12Q6ZSM3 486 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ANKRD33Q7Z3H0 272 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ZBTB46Q86UZ6 589 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 OFCC1Q8IZS5 231 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 DCLK2Q8N568 766 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ASCC1Q8N9N2 400 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 OR6Q1Q8NGQ2 317 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HCAR2Q8TDS4 363 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ZFP90Q8TF47 636 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 TTC9Q92623 222 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HDAC2Q92769 488 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 MUL1Q969V5 352 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 UBXN10Q96LJ8 280 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ZFP42Q96MM3 310 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 NIF3L1Q9GZT8 377 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 TRIT1Q9H3H1 467 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 HPS4Q9NQG7 708 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP3-206ENST00000558157 PCDHGA3Q9Y5H0 932 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 A0A096LPK6 155 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 SMIM28A0A1B0GU29 152 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 TTC24A2A3L6 582 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 BBIP1A8MTZ0 92 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 EI24O14681 340 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PPEF2O14830 753 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 MED7O43513 233 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 CAPN15O75808 1086 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 UBL4AP11441 157 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 CDH1P12830 882 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HSD17B1P14061 328 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 KCNE1P15382 129 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PRKCAP17252 672 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 IL12AP29459 219 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PTPN9P43378 593 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 RALGDSQ12967 914 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PTPN20Q4JDL3 420 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 LDLRAP1Q5SW96 308 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 CASC4Q6P4E1 433 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 RFPL4BQ6ZWI9 263 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 GRPEL2Q8TAA5 225 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ADAM32Q8TC27 787 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 AGR3Q8TD06 166 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 LINC01599Q8WXQ3 324 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 ERLEC1Q96DZ1 483 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 HOPXQ9BPY8 73 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 ACE2Q9BYF1 805 aaPredicted RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 RHOBTB2Q9BYZ6 727 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PCDH12Q9NPG4 1184 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP3-206ENST00000558157 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms