RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TLX3O43711 291 aaPredicted RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 NOBOXO60393 691 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 ZRANB2O95218 330 aaKnown RBP eCLIP11.79□□□□□ -0.52
VRK1-204ENST00000555351 SOD1P00441 154 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 CD86P42081 329 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 NOP2P46087 812 aaKnown RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 AP1B1Q10567 949 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 ZBTB17Q13105 803 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 HLTFQ14527 1009 aaKnown RBP eCLIP11.79□□□□□ -0.52
VRK1-204ENST00000555351 NR1D2Q14995 579 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 PRKD1Q15139 912 aaPredicted RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 QPCTQ16769 361 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 TEX44Q53QW1 395 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 TFDP3Q5H9I0 405 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 DENND2CQ68D51 928 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 KCTD16Q68DU8 428 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 MFSD7Q6UXD7 560 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 ZNF438Q7Z4V0 828 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 NT5DC3Q86UY8 548 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 RFX6Q8HWS3 928 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 RCOR2Q8IZ40 523 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 ZNF248Q8NDW4 579 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 LPCAT1Q8NF37 534 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 WDR36Q8NI36 951 aaKnown RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 CCDC74AQ96AQ1 378 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 TMEM159Q96B96 161 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 RNF25Q96BH1 459 aaPredicted RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 GFM1Q96RP9 751 aaKnown RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 TRIB3Q96RU7 358 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 VAT1Q99536 393 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 RMI1Q9H9A7 625 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 CARS2Q9HA77 564 aaKnown RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 MAGEE1Q9HCI5 957 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 MRPL40Q9NQ50 206 aaKnown RBP11.79□□□□□ -0.52
VRK1-204ENST00000555351 THSD1Q9NS62 852 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 PKD2L2Q9NZM6 624 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 EFR3BQ9Y2G0 817 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 PCDHA13Q9Y5I0 950 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 CFAP47Q6ZTR5 3102 aa11.79□□□□□ -0.52
VRK1-204ENST00000555351 CCDC187A0A096LP49 1063 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 C1orf232A0A0U1RR37 186 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 HACD1B0YJ81 288 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 GPR89AB7ZAQ6 455 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 D6RAR5 112 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 IPO7O95373 1038 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 FUCA1P04066 466 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 GPR89BP0CG08 455 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 CCKBRP32239 447 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 ABCG1P45844 678 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 GPR3P46089 330 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 SPINT3P49223 89 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 ZNF75DP51815 510 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 PCBP4P57723 403 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 DCDC1P59894 354 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 COPS2P61201 443 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 GABREP78334 506 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 PPP2R5EQ16537 467 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 COL28A1Q2UY09 1125 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 HENMT1Q5T8I9 393 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 PDPK2PQ6A1A2 396 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 SPOCD1Q6ZMY3 1216 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 PDZD3Q86UT5 571 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 NRROSQ86YC3 692 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 CCNJLQ8IV13 435 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 TFB1MQ8WVM0 346 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 CCDC97Q96F63 343 aaPredicted RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 RBM41Q96IZ5 413 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 TEKT5Q96M29 485 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 TMEM74Q96NL1 305 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 SLC46A1Q96NT5 459 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 RIOK2Q9BVS4 552 aaKnown RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 DPH1Q9BZG8 443 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 STRADBQ9C0K7 418 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 LRRN3Q9H3W5 708 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 DPEP2Q9H4A9 486 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 ASCL3Q9NQ33 180 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 SIRPGQ9P1W8 387 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 MOSPD1Q9UJG1 213 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 SUFUQ9UMX1 484 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 EPN1Q9Y6I3 576 aaPredicted RBP11.78□□□□□ -0.52
VRK1-204ENST00000555351 ASXL3Q9C0F0 2248 aa11.78□□□□□ -0.52
VRK1-204ENST00000555351 GOLGA6CA6NDK9 693 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 GOLGA6BA6NDN3 693 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 CST8O60676 142 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 ZNF189O75820 626 aaPredicted RBP11.77□□□□□ -0.53
VRK1-204ENST00000555351 NDUFA10O95299 355 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 CLDN7O95471 211 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 EPOP01588 193 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 MPOP05164 745 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 FGF1P05230 155 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 GOLGA6DP0CG33 693 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 RBMS1P29558 406 aaKnown RBP11.77□□□□□ -0.53
VRK1-204ENST00000555351 ADCY8P40145 1251 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 PDX1P52945 283 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 UCNP55089 124 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 CDK18Q07002 472 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 XRCC4Q13426 336 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 SQSTM1Q13501 440 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 PTPRRQ15256 657 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 PYCR3Q53H96 274 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms