RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 SLC8A2Q9UPR5 921 aa4.32□□□□□ -1.72
VTI1B-203ENST00000554636 CNTN6Q9UQ52 1028 aa4.32□□□□□ -1.72
VTI1B-203ENST00000554636 SIK3Q9Y2K2 1263 aa4.32□□□□□ -1.72
VTI1B-203ENST00000554636 TNRC6BQ9UPQ9 1833 aaKnown RBP4.32□□□□□ -1.72
VTI1B-203ENST00000554636 MUC22E2RYF6 1773 aaPredicted RBP4.32□□□□□ -1.72
VTI1B-203ENST00000554636 CNOT1A5YKK6 2376 aaKnown RBP4.32□□□□□ -1.72
VTI1B-203ENST00000554636 CKAP5Q14008 2032 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 NUP205Q92621 2012 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 GAGE12BA1L429 117 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 GTPBP10A4D1E9 387 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 GAGE12HA6NDE8 117 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TMEM200CA6NKL6 621 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 YJEFN3A6XGL0 299 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 BECN2A8MW95 431 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PRRT4C9JH25 899 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DIRC3C9JPN6 131 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 E7ENQ6 273 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 NEDD8-MDP1E9PL57 170 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 M0QYV0 167 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SGK1O00141 431 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CACNG3O60359 315 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ATG13O75143 517 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RPP40O75818 363 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ENDOD1O94919 500 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 EPN2O95208 641 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SPDEFO95238 335 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 FGFR1OPO95684 399 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 APBB3O95704 486 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ZBED1O96006 694 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PENKP01210 267 aaPredicted RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 APODP05090 189 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RETP07949 1114 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CISD3P0C7P0 127 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CCDC192P0DO97 292 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ITGAMP11215 1152 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RALAP11233 206 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CORO1AP31146 461 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ATP5C1P36542 298 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ANP32AP39687 249 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PXNP49023 591 aaPredicted RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RGS7P49802 495 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DAOAP59103 153 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 MRPS21P82921 87 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 COL10A1Q03692 680 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 MGAT2Q10469 447 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SIM2Q14190 667 aaPredicted RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ANO4Q32M45 955 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DPCR1Q3MIW9 517 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 EMC10Q5UCC4 262 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 AGAP9Q5VTM2 703 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DPY19L2P1Q6NXN4 242 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PMF1Q6P1K2 205 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 MSANTD2Q6P1R3 559 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 GJB7Q6PEY0 223 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TRIM65Q6PJ69 517 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 Q6YL49 198 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TOGARAM2Q6ZUX3 1019 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RRAGAQ7L523 313 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TADA2BQ86TJ2 420 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 FAM217AQ8IXS0 508 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DRC7Q8IY82 874 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 KIAA2013Q8IYS2 634 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ARHGAP18Q8N392 663 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CCDC33Q8N5R6 958 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CAMKK1Q8N5S9 505 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ALLCQ8N6M5 410 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TERB1Q8NA31 727 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 IL17RCQ8NAC3 791 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 MLKLQ8NB16 471 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 TSTD1Q8NFU3 115 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SLC35F5Q8WV83 523 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ASB10Q8WXI3 467 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CAVIN3Q969G5 261 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 RMDN1Q96DB5 314 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PNKPQ96T60 521 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 THAP9Q9H5L6 903 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 LRRC4Q9HBW1 653 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SIX2Q9NPC8 291 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 ZDHHC4Q9NPG8 344 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 CNGB3Q9NQW8 809 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 LMBRD1Q9NUN5 540 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 DNAJC17Q9NVM6 304 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 HESX1Q9UBX0 185 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 SLC23A1Q9UHI7 598 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 GMEB2Q9UKD1 530 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PACSIN3Q9UKS6 424 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 AGO1Q9UL18 857 aaKnown RBP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 KIAA1257Q9ULG3 409 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 MMP17Q9ULZ9 603 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.31□□□□□ -1.72
VTI1B-203ENST00000554636 WDR87Q6ZQQ6 2873 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 THADAQ6YHU6 1953 aa4.31□□□□□ -1.72
VTI1B-203ENST00000554636 PI4KAP42356 2102 aa4.3□□□□□ -1.72
VTI1B-203ENST00000554636 TCRBV7S2A1N4TA0A589 114 aa4.3□□□□□ -1.72
VTI1B-203ENST00000554636 CCDC78A2IDD5 438 aa4.3□□□□□ -1.72
VTI1B-203ENST00000554636 MSI1O43347 362 aaKnown RBP4.3□□□□□ -1.72
VTI1B-203ENST00000554636 LRP3O75074 770 aa4.3□□□□□ -1.72
VTI1B-203ENST00000554636 PRSS23O95084 383 aa4.3□□□□□ -1.72
VTI1B-203ENST00000554636 KLF8O95600 359 aaPredicted RBP4.3□□□□□ -1.72
VTI1B-203ENST00000554636 NUDT3O95989 172 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms