RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	GPR88	Q9GZN0	384 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	POLR1E	Q9GZS1	481 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CTDSP1	Q9GZU7	261 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OR10A2	Q9H208	303 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	IKZF4	Q9H2S9	585 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	EPHX3	Q9H6B9	360 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	XKR8	Q9H6D3	395 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PARPBP	Q9NWS1	579 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CRNN	Q9UBG3	495 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	DNAJB11	Q9UBS4	358 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	BAIAP2L1	Q9UHR4	511 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	VPS51	Q9UID3	782 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	AGO2	Q9UKV8	859 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	USP22	Q9UPT9	525 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	RAD54B	Q9Y620	910 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440		U3KQV3	271 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LOC105369274	A0A096LPK9	316 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LOC102723532	A0A0G2JNH3	316 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	EDDM13	A0A1B0GTR0	161 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CXorf49	A8MYA2	514 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PER2	O15055	1255 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	EIF3D	O15371	548 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	NARS	O43776	548 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MITF	O75030	526 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HAUS5	O94927	633 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PRSS23	O95084	383 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	KRT6B	P04259	564 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	KRT8	P05787	483 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TPM3	P06753	285 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ADRA2C	P18825	462 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HNRNPA2B1	P22626	353 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	NR2F2	P24468	414 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CD27	P26842	260 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CORO1A	P31146	461 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HIBADH	P31937	336 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MCM5	P33992	734 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ABCG1	P45844	678 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	KRT6C	P48668	564 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ADCY7	P51828	1080 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	BPIFB4	P59827	614 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	UBE2H	P62256	183 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TUBA3C	Q13748	450 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SQLE	Q14534	574 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CEBPE	Q15744	281 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GSTA3	Q16772	222 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	RNF151	Q2KHN1	245 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GAGE13	Q4V321	117 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF667	Q5HYK9	610 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF529	Q6P280	563 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TUBA3E	Q6PEY2	450 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	METAP1D	Q6UB28	335 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CENPQ	Q7L2Z9	268 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HAUS6	Q7Z4H7	955 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SPATA21	Q7Z572	469 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PSTK	Q8IV42	348 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MCEMP1	Q8IX19	187 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OR4N4	Q8N0Y3	316 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LINC00469	Q8N7U9	141 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MCU	Q8NE86	351 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	FAM46D	Q8NEK8	389 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	OR5M3	Q8NGP4	307 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LRRC8C	Q8TDW0	803 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PTPMT1	Q8WUK0	201 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GLMP	Q8WWB7	406 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	KAT2A	Q92830	837 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SCAMP4	Q969E2	229 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	HES6	Q96HZ4	224 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ATP6V1G3	Q96LB4	118 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	RAD9A	Q99638	391 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TUBA1C	Q9BQE3	449 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PAAF1	Q9BRP4	392 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ZSCAN5A	Q9BUG6	496 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TPPP3	Q9BW30	176 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	PLA2G12B	Q9BX93	195 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	CLPB	Q9H078	707 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SERHL2	Q9H4I8	314 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	LRRC40	Q9H9A6	602 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	FAM212B	Q9NTI7	297 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	TRMT6	Q9UJA5	497 aa	Known RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	ING1	Q9UK53	422 aa	Predicted RBP	4.23	□□□□□ -1.73
USP44-208	ENST00000552440	GMEB2	Q9UKD1	530 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	DLGAP4	Q9Y2H0	992 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	SPACA6	W5XKT8	324 aa		4.23	□□□□□ -1.73
USP44-208	ENST00000552440	DCAF1	Q9Y4B6	1507 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PNPLA7	Q6ZV29	1317 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	NPHP3	Q7Z494	1330 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF644	Q9H582	1327 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RIMBP3C	A6NJZ7	1639 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RIMBP3B	A6NNM3	1639 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RIMBP3	Q9UFD9	1639 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ELOVL7	A1L3X0	281 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	FAM47DP	A6NHR8	397 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TBKBP1	A7MCY6	615 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PRR5-ARHGAP8	B1AHC4	643 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440		M0QYT0	321 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	HS6ST1	O60243	411 aa		4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms