RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 HOXA9P31269 272 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 PTPN7P35236 360 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 CCR3P51677 355 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 CBX1P83916 185 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 MPP1Q00013 466 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 RING1Q06587 406 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 SLC29A2Q14542 456 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 ACAP1Q15027 740 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 RAB41Q5JT25 222 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 SPDYAQ5MJ70 313 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 DUS1LQ6P1R4 473 aaKnown RBP7.23□□□□□ -1.25
MSH6-209ENST00000538136 FBXO38Q6PIJ6 1188 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 FAM47EQ6ZV65 393 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 OOSP2Q86WS3 158 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 SNX31Q8N9S9 440 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 CMASQ8NFW8 434 aaPredicted RBP7.23□□□□□ -1.25
MSH6-209ENST00000538136 OR2T3Q8NH03 318 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 OXNAD1Q96HP4 312 aaPredicted RBP7.23□□□□□ -1.25
MSH6-209ENST00000538136 S1PR5Q9H228 398 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 C12orf65Q9H3J6 166 aaKnown RBP7.23□□□□□ -1.25
MSH6-209ENST00000538136 GDF3Q9NR23 364 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 NKIRAS1Q9NYS0 192 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 VPS18Q9P253 973 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 FTSJ1Q9UET6 329 aa7.23□□□□□ -1.25
MSH6-209ENST00000538136 NOVA2Q9UNW9 492 aaKnown RBP7.23□□□□□ -1.25
MSH6-209ENST00000538136 NDST3O95803 873 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 SLC35G4P0C7Q5 338 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 CHRM1P11229 460 aaPredicted RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 ADRB3P13945 408 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 FNTAP49354 379 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ERFP50548 548 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 WDR45BQ5MNZ6 344 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 FAAH2Q6GMR7 532 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PLD3Q8IV08 490 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PPIL6Q8IXY8 311 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 OR4E2Q8NGC2 313 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 OR2A12Q8NGT7 310 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PRR11Q96HE9 360 aaPredicted RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 MSLNLQ96KJ4 702 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 TEKT5Q96M29 485 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 C12orf66Q96MD2 445 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 AGAP2Q99490 1192 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 GPAMQ9HCL2 828 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 UPK3BL1B0FP48 263 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 UPK3BL2E5RIL1 263 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PMM2O15305 246 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 GDF9O60383 454 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ECI2O75521 394 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ASLP04424 464 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 NR2C2P49116 596 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PPP2CBP62714 309 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PPP2CAP67775 309 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 FOXC1Q12948 553 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 BNIP3Q12983 259 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 RPS6KA2Q15349 733 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PUS10Q3MIT2 529 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 SMYD5Q6GMV2 418 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ALYREFQ86V81 257 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 MARCH9Q86YJ5 346 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PHYKPLQ8IUZ5 450 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PCDH20Q8N6Y1 951 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 FOXJ1Q92949 421 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 BIRC7Q96CA5 298 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 NUS1Q96E22 293 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 RILPQ96NA2 401 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 TSPYL1Q9H0U9 437 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 LRRC40Q9H9A6 602 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 STOX2Q9P2F5 926 aaPredicted RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 KLQ9UEF7 1012 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 KLF15Q9UIH9 416 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ZMYM5Q9UJ78 669 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PLEKHM1Q9Y4G2 1056 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 CCDC168Q8NDH2 2452 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 NPIPB15A6NHN6 443 aaPredicted RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 RASGRF2O14827 1237 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 OR1I1O60431 355 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ZXDAP98168 799 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PRKAA1Q13131 559 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 SF1Q15637 639 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 ZNF805Q5CZA5 627 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 SIRPB2Q5JXA9 342 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 CXorf57Q6NSI4 855 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 TRMT10BQ6PF06 316 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 RIPOR1Q6ZS17 1223 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 KCNMB4Q86W47 210 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 RAVER1Q8IY67 606 aaKnown RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 LNPEPQ9UIQ6 1025 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 SPEGQ15772 3267 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 TRIM49D1C9J1S8 452 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 BTN3A1O00481 513 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 BCAT2O15382 392 aaPredicted RBP7.22□□□□□ -1.25
MSH6-209ENST00000538136 KDELR3O43731 214 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 PRAMEF11O60813 436 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 FAM153BP0C7A2 387 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 VCLP18206 1134 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 CD6P30203 668 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 ELP6Q0PNE2 266 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 MPP3Q13368 585 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 SEMA5AQ13591 1074 aa7.22□□□□□ -1.25
MSH6-209ENST00000538136 EFTUD2Q15029 972 aaKnown RBP eCLIP7.22□□□□□ -1.252e-7■■■□□ 17.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms