RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZNF711Q9Y462 761 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 FADS3Q9Y5Q0 445 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 SQORQ9Y6N5 450 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 A0A1W2PPW3 197 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 IGLV3-25P01717 112 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 LBPP18428 481 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 PRDX3P30048 256 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 BRMS1LQ5PSV4 323 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 MANEALQ5VSG8 457 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 ANKRD23Q86SG2 305 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 ADGRG5Q8IZF4 528 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 GABPB2Q8TAK5 448 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 ROPN1LQ96C74 230 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 THAP11Q96EK4 314 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 GPATCH1Q9BRR8 931 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 C1orf50Q9BV19 199 aa9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 POLR3BQ9NW08 1133 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-215ENST00000512632 CCDC162PA2VCL2 907 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC7A4O43246 635 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CLASP2O75122 1294 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ATE1O95260 518 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 PEX11BO96011 259 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GOT2P00505 430 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC2A3P11169 496 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 MTHFD2P13995 350 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CD1DP15813 335 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ARL1P40616 181 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GSK3BP49841 420 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CLCN2P51788 898 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 TUBA4AP68366 448 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GALNT3Q14435 633 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GRB14Q14449 540 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SEMA3AQ14563 771 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CCL14Q16627 93 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 PIK3R6Q5UE93 754 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 OVOS1Q6IE37 1185 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 RAB44Q7Z6P3 723 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 MIB1Q86YT6 1006 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GPR152Q8TDT2 470 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 DUS3LQ96G46 650 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 HOPXQ9BPY8 73 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 MRGBPQ9NV56 204 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 OSER1Q9NX31 292 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 POLG2Q9UHN1 485 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SUPT3HB4E1H0 165 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ENPP3O14638 875 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ODC1P11926 461 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 PMS2P3Q13401 168 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 UPP1Q16831 310 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 PAGE3Q5JUK9 113 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 TMEM26Q6ZUK4 368 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 TRPV3Q8NET8 790 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 NUDT8Q8WV74 236 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 HBEGFQ99075 208 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SEMA3CQ99985 751 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ARNT2Q9HBZ2 717 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ABI2Q9NYB9 513 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 TSR3Q9UJK0 312 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 AQP12BA6NM10 295 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 B4GAT1O43505 415 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 KPNA6O60684 536 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 BMP10O95393 424 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GLP2RO95838 553 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM163BP0C2L3 166 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 EEF1DP29692 281 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GALNT1Q10472 559 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ZBED5Q49AG3 693 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 HACD2Q6Y1H2 254 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SPATA2LQ8IUW3 424 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 AQP12AQ8IXF9 295 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ZUFSPQ96AP4 578 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 L3HYPDHQ96EM0 354 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CENPNQ96H22 339 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 VPS50Q96JG6 964 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 TSPAN18Q96SJ8 248 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ACBD6Q9BR61 282 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 AGPAT4Q9NRZ5 378 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 GID8Q9NWU2 228 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 FLRT1Q9NZU1 646 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM155AB1AL88 458 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CD3EAPO15446 510 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 LDB2O43679 373 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 SNAP29O95721 258 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 MMP2P08253 660 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 EEF1B2P24534 225 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 NUP107P57740 925 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 LIPEQ05469 1076 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 DDR2Q16832 855 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 FGD3Q5JSP0 725 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM171BQ6P995 826 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 PAQR3Q6TCH7 311 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 RALGPS2Q86X27 583 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 CCDC117Q8IWD4 279 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 DHRSXQ8N5I4 330 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 C9orf16Q9BUW7 83 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 ACTR3BQ9P1U1 418 aa9.23□□□□□ -0.93
LIMCH1-215ENST00000512632 M0QZ92 97 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 PCNAP12004 261 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 FMO4P31512 558 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms