RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ARL14EPQ8N8R7 260 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SEPHS2Q99611 448 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 NDEL1Q9GZM8 345 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SEMA6AQ9H2E6 1030 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 CRTAC1Q9NQ79 661 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 DNAAF2Q9NVR5 837 aaKnown RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SH3BP4Q9P0V3 963 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 BTRCQ9Y297 605 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 TCAF1Q9Y4C2 921 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SQORQ9Y6N5 450 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 A6NHS1 94 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CCDC154A6NI56 674 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 NEDD8-MDP1E9PL57 170 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CCNFP41002 786 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 MPPE1Q53F39 396 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 FSTL4Q6MZW2 842 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CENPLQ8N0S6 344 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 EFCAB3Q8N7B9 438 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CDYL2Q8N8U2 506 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 RP9Q8TA86 221 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 RDH11Q8TC12 318 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 OR8D1Q8WZ84 308 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 MTFMTQ96DP5 389 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 AGAP2Q99490 1192 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 KCTD14Q9BQ13 255 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ADAMTS10Q9H324 1103 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 WDR55Q9H6Y2 383 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 VRTNQ9H8Y1 702 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 RMI1Q9H9A7 625 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TUBA8Q9NY65 449 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 EVLQ9UI08 416 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CDH22Q9UJ99 828 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ANXA5P08758 320 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 PEX2P28328 305 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TCEAL1Q15170 157 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 INSCQ1MX18 579 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 HECTD2Q5U5R9 776 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TRIB2Q92519 343 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CLK4Q9HAZ1 481 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 GNPTGQ9UJJ9 305 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TDRKHQ9Y2W6 561 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TOGARAM1Q9Y4F4 1720 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 A0A1B0GVM2 712 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 TCAF2A6NFQ2 919 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 FFAR3O14843 346 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 GPR42O15529 346 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CDH3P22223 829 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 MPSTP25325 297 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 GPC1P35052 558 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 VEGFBP49765 207 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ITGADQ13349 1161 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 PRMT9Q6P2P2 845 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 OR9Q1Q8NGQ5 310 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ELMO1Q92556 727 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 EMID1Q96A84 441 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 LINGO1Q96FE5 620 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 HAPLN3Q96S86 360 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 SH3GL1Q99961 368 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 RTKNQ9BST9 563 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ARHGAP39Q9C0H5 1083 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ZNF556Q9HAH1 456 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 A0A1W2PQ45 241 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 A0A1W2PQY0 241 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CCDC189A1A4V9 331 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 RPP40O75818 363 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ZNF682O95780 498 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CATP04040 527 aaKnown RBP11.01□□□□□ -0.65
HDAC6-228ENST00000486227 PFKMP08237 780 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 FAM163BP0C2L3 166 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 LRPAP1P30533 357 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 DENND6AQ8IWF6 608 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 GLMNQ92990 594 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 ABHD8Q96I13 439 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 MAGEH1Q9H213 219 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CYTH4Q9UIA0 394 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 CPQQ9Y646 472 aa11.01□□□□□ -0.65
HDAC6-228ENST00000486227 F8W810 466 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 TRIM38O00635 465 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 PLIN3O60664 434 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 IQCF3P0C7M6 154 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 ATP6V1E1P36543 226 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 NDST2P52849 883 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 RPS24P62847 133 aaKnown RBP11□□□□□ -0.65
HDAC6-228ENST00000486227 IRF8Q02556 426 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 TRIM60Q495X7 471 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 UNC5BQ8IZJ1 945 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 BANPQ8N9N5 519 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 OTULINQ96BN8 352 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 MYO19Q96H55 970 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 EPS8L2Q9H6S3 715 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 TMEM216Q9P0N5 145 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 VPS4BO75351 444 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 HOXA11P31270 313 aaPredicted RBP11□□□□□ -0.65
HDAC6-228ENST00000486227 RFC2P35250 354 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 GPR1P46091 355 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 ANXA11P50995 505 aaKnown RBP11□□□□□ -0.65
HDAC6-228ENST00000486227 AQP4P55087 323 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 DMC1Q14565 340 aa11□□□□□ -0.65
HDAC6-228ENST00000486227 NR1D2Q14995 579 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms