RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RGS4P49798 205 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 GALNT3Q14435 633 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 SLC10A6Q3KNW5 377 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 RBM20Q5T481 1227 aaKnown RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 SLC26A9Q7LBE3 791 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 GPSM1Q86YR5 675 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ARFGAP1Q8N6T3 406 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 PNPT1Q8TCS8 783 aaKnown RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 TYW5A2RUC4 315 aaKnown RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 CBX4O00257 560 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 SOCS2O14508 198 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ANXA6P08133 673 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 EFNA1P20827 205 aaPredicted RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 MAGEA8P43361 318 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 RENBPP51606 427 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 HTRA3P83110 453 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 SNX17Q15036 470 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 HECTD2Q5U5R9 776 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 NCBP2-AS2Q69YL0 99 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ANKRD46Q86W74 232 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 OR56A4Q8NGH8 313 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 HM13Q8TCT9 377 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 CRYGNQ8WXF5 182 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 MUS81Q96NY9 551 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 APOL4Q9BPW4 351 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 SMOXQ9NWM0 555 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 DUSP12Q9UNI6 340 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 IPPQ9Y573 584 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 KLRG2A4D1S0 409 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 PRORSD1PA6NEY8 169 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 EFCAB10A6NFE3 127 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 MSCO60682 206 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 SNNO75324 88 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 LRIG2O94898 1065 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 TGFB3P10600 412 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 S100A1P23297 94 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 RPS12P25398 132 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 PNPLA4P41247 253 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 SLC1A2P43004 574 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 CPSF6Q16630 551 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP42-206ENST00000479544 MEP1AQ16819 746 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 AMER2Q8N7J2 671 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 PSD4Q8NDX1 1056 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 OR10A6Q8NH74 314 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 STAG3L4Q8TBR4 150 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 TEKT5Q96M29 485 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 KCNA7Q96RP8 456 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 HOPXQ9BPY8 73 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 PRKD2Q9BZL6 878 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP42-206ENST00000479544 SH3BP4Q9P0V3 963 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 UXTQ9UBK9 157 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 PRKAB1Q9Y478 270 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 USP54Q70EL1 1684 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 C2orf81A6NN90 581 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 A8MV72 311 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 TNPO2O14787 897 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 NDUFB5O43674 189 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 FARP2O94887 1054 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 SLC25A27O95847 323 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 TRIM32Q13049 653 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 DGKKQ5KSL6 1271 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 TYW3Q6IPR3 259 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 MCOLN3Q8TDD5 553 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 HSFY1Q96LI6 401 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 GAD1Q99259 594 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 ELOVL6Q9H5J4 265 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 AKTIPQ9H8T0 292 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 GMPR2Q9P2T1 348 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 SLC13A4Q9UKG4 626 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 CNTN6Q9UQ52 1028 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 H3BNH8 94 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 ARPC2O15144 300 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 VILLO15195 856 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 XYLBO75191 536 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 PPIL2Q13356 520 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 COLEC12Q5KU26 742 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 FIBCD1Q8N539 461 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 REXO5Q96IC2 774 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 SENP8Q96LD8 212 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 VAT1Q99536 393 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 SMURF2Q9HAU4 748 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 SAMHD1Q9Y3Z3 626 aaKnown RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 POLR3HQ9Y535 204 aaPredicted RBP13.49□□□□□ -0.25
USP42-206ENST00000479544 PCDHGB5Q9Y5G0 923 aa13.49□□□□□ -0.25
USP42-206ENST00000479544 MYO5AQ9Y4I1 1855 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 SNAPC2Q13487 334 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 FSCN1Q16658 493 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 RRM2BQ7LG56 351 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SLC22A16Q86VW1 577 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SETD9Q8NE22 299 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 SEMA3CQ99985 751 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 CHCHD6Q9BRQ6 235 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 WDR12Q9GZL7 423 aaKnown RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 PNPLA8Q9NP80 782 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 CRLS1Q9UJA2 301 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 ITGB1BP2Q9UKP3 347 aa13.48□□□□□ -0.25
USP42-206ENST00000479544 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.48□□□□□ -0.25
USP42-206ENST00000479544 ARID1BQ8NFD5 2236 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms