RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PBXIP1Q96AQ6 731 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 PTERQ96BW5 349 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 MYOCQ99972 504 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 CXorf56Q9H5V9 222 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 ATXN2Q99700 1313 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 CAPN8A6NHC0 703 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 SAC3D1A6NKF1 404 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 OR2AG2A6NM03 316 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 PSMD12O00232 456 aaPredicted RBP13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 KPNA3O00505 521 aaPredicted RBP13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 TGDSO95455 350 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 RBP1P09455 135 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 THRAP10827 490 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 CTNNB1P35222 781 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 CDK7P50613 346 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 IL10RBQ08334 325 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 CPSF6Q16630 551 aaKnown RBP eCLIP13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 ADGRF1Q5T601 910 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 METTL6Q8TCB7 284 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 PGAP3Q96FM1 320 aaPredicted RBP13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF334Q9HCZ1 680 aaPredicted RBP13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 TMEM248Q9NWD8 314 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 WWOXQ9NZC7 414 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 CDH22Q9UJ99 828 aa13.71□□□□□ -0.22
CCDC88A-211ENST00000471947 PIP5K1BO14986 540 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 LPOP22079 712 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 HSPA7P48741 367 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 C1QTNF8P60827 252 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 TRAF2Q12933 501 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 RBBP5Q15291 538 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 NR6A1Q15406 480 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 IMPG1Q17R60 797 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 TSPAN33Q86UF1 283 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 FIBCD1Q8N539 461 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 FNDC5Q8NAU1 212 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 GDPD5Q8WTR4 605 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 TSPAN18Q96SJ8 248 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC30A3Q99726 388 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 TBCDQ9BTW9 1192 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 ADGRE3Q9BY15 652 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 LINC00597Q9H2U6 94 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 EML4Q9HC35 981 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 SPG21Q9NZD8 308 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 WNT6Q9Y6F9 365 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 MRASO14807 208 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 CLASP2O75122 1294 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 RPP40O75818 363 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 PRAMEF1O95521 474 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 CYBBP04839 570 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 RPL34P49207 117 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 NDST2P52849 883 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC18A1P54219 525 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 PARP15Q460N3 678 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 KIAA0930Q6ICG6 404 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 KDELC1Q6UW63 502 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 IL27RAQ6UWB1 636 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 Q6ZVU0 165 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 ARRDC2Q8TBH0 407 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 RAB3IL1Q8TBN0 382 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF333Q96JL9 665 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 VPS51Q9UID3 782 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 COPG1Q9Y678 874 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 MYOFQ9NZM1 2061 aa13.7□□□□□ -0.22
CCDC88A-211ENST00000471947 A0A1B0GVM2 712 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TCAF2A6NFQ2 919 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF839A8K0R7 811 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 AP3B1O00203 1094 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 SNNO75324 88 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 OR4F21O95013 312 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ITGAXP20702 1163 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 CCDC15Q0P6D6 951 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 AP5B1Q2VPB7 878 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 UMODL1-AS1Q8N2C9 162 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 MDGA1Q8NFP4 955 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 EME1Q96AY2 570 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TCEAL4Q96EI5 215 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PRICKLE1Q96MT3 831 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TCF25Q9BQ70 676 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 C17orf80Q9BSJ5 609 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 EFCAB1Q9HAE3 211 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF638Q14966 1978 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PFDN6O15212 129 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PRAMEF11O60813 436 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 CLDN11O75508 207 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 LRATO95237 230 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PARNO95453 639 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 S1PR4O95977 384 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 GSRP00390 522 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PCNAP12004 261 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 CLCN5P51795 746 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TIGD2Q4W5G0 525 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 GPSM1Q86YR5 675 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF398Q8TD17 642 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 GANCQ8TET4 914 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC39A13Q96H72 371 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TSGA13Q96PP4 275 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 SERPINI1Q99574 410 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TMEM106CQ9BVX2 250 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ATG10Q9H0Y0 220 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 HECAQ9UBI9 543 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms