RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 B3GNT3Q9Y2A9 372 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 NDUFAF1Q9Y375 327 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 PMF1-BGLAPU3KQ54 211 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 SIP14410 1827 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 TCRBV5S2A0A599 114 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 AP3B1O00203 1094 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 DCLK1O15075 740 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 ABCB7O75027 752 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 PMPCBO75439 489 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 SLC4A1P02730 911 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 PRKACGP22612 351 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
CPSF3-202ENST00000460593 NOS2P35228 1153 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 MAP2K4P45985 399 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 OR4D2P58180 307 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 SH3BP2P78314 561 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 RBP5P82980 135 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 TRIM32Q13049 653 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 MXD4Q14582 209 aaPredicted RBP11.7□□□□□ -0.54
CPSF3-202ENST00000460593 RPS6KA2Q15349 733 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 RBM23Q86U06 439 aaKnown RBP11.7□□□□□ -0.54
CPSF3-202ENST00000460593 MAGED4Q96JG8 741 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 NACA2Q9H009 215 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 TOR3AQ9H497 397 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 GPN2Q9H9Y4 310 aaPredicted RBP11.7□□□□□ -0.54
CPSF3-202ENST00000460593 PAK1IP1Q9NWT1 392 aaPredicted RBP11.7□□□□□ -0.54
CPSF3-202ENST00000460593 USP21Q9UK80 565 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 PCDHGA11Q9Y5H2 935 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 DNAJC15Q9Y5T4 150 aa11.7□□□□□ -0.54
CPSF3-202ENST00000460593 TTC24A2A3L6 582 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CPB1P15086 417 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ARF4P18085 180 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 GP2P55259 537 aaKnown RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CTF1Q16619 201 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 GPR158Q5T848 1215 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ATAD3BQ5T9A4 648 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TXNDC11Q6PKC3 985 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 FAM86B1Q8N7N1 296 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 DCBLD1Q8N8Z6 715 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 OR52K2Q8NGK3 314 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 PTCD2Q8WV60 388 aaKnown RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ELMO1Q92556 727 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TMBIM1Q969X1 311 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TUBGCP3Q96CW5 907 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 DHRS1Q96LJ7 313 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ZMAT2Q96NC0 199 aaKnown RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 RHNO1Q9BSD3 238 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 FICDQ9BVA6 458 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TRIM15Q9C019 465 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TP63Q9H3D4 680 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 NTN4Q9HB63 628 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 HMG20AQ9NP66 347 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 GJD2Q9UKL4 321 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TNFSF13BQ9Y275 285 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 DNAH12Q6ZR08 3092 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 COL11A2P13942 1736 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 HGFP14210 728 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 SPNP16150 400 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 MZF1P28698 734 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 MATKP42679 507 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CCNA1P78396 465 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 PCSK7Q16549 785 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 AAK1Q2M2I8 961 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ADPRMQ3LIE5 342 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 AGAP7PQ5VUJ5 663 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 SLC22A15Q8IZD6 547 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 PDPRQ8NCN5 879 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TMEM125Q96AQ2 219 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CTRCQ99895 268 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 RHOBTB2Q9BYZ6 727 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CEP44Q9C0F1 390 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ABCD2Q9UBJ2 740 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TIMM22Q9Y584 194 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 LRIG2O94898 1065 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 HRH2P25021 359 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ATICP31939 592 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 BMPR1AP36894 532 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ARSFP54793 590 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TPI1P60174 286 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 NCS1P62166 190 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CDH17Q12864 832 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 FAM160B1Q5W0V3 765 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TMEM207Q6UWW9 146 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CCDC81Q6ZN84 652 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 RPL3LQ92901 407 aaKnown RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 HDAC11Q96DB2 347 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CLIP3Q96DZ5 547 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 NRBF2Q96F24 287 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ZNF641Q96N77 438 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-202ENST00000460593 TUBA1CQ9BQE3 449 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 MID1IP1Q9NPA3 183 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ITGB1BP2Q9UKP3 347 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 CEP350Q5VT06 3117 aa11.69□□□□□ -0.54
CPSF3-202ENST00000460593 ASPDHA6ND91 283 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 ZNF487B1APH4 448 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 GUCY1B2O75343 617 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 CNTN5O94779 1100 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 S100A1P23297 94 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 SMUG1Q53HV7 270 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms