RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SNX31Q8N9S9 440 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SIMC1Q8NDZ2 872 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PSMA8Q8TAA3 256 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SNX19Q92543 992 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SGK3Q96BR1 496 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 DMRTB1Q96MA1 342 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 CLPBQ9H078 707 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SLC39A1Q9NY26 324 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 GRID1Q9ULK0 1009 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PSMD13Q9UNM6 376 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 TRAV19A0A0A6YYK7 116 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ISPDA4D126 451 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 KIAA0355O15063 1070 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 HMGN1P05114 100 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 S100A9P06702 114 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 RPL21P46778 160 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 MAPKAPK2P49137 400 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SRP54P61011 504 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 CYP4F2P78329 520 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 CYP4F3Q08477 520 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 LSM12Q3MHD2 195 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 UGT3A1Q6NUS8 523 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ARSKQ6UWY0 536 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 AGMOQ6ZNB7 445 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 CCDC33Q8N5R6 958 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 LNX1Q8TBB1 728 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 MROQ9BYG7 248 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 HOXD1Q9GZZ0 328 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SAV1Q9H4B6 383 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 ERVMER34-1Q9H9K5 563 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 APOBEC3GQ9HC16 384 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 DNMT3LQ9UJW3 386 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ADAMTS6Q9UKP5 1117 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 I3L521 148 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ZNF701M0R085 212 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 FGF10O15520 208 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 TSC22D2O75157 780 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SOD2P04179 222 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 CCT3P49368 545 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 HADHBP55084 474 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 MYBPC1Q00872 1141 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 CD83Q01151 205 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 C4orf46Q504U0 113 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 TFDP3Q5H9I0 405 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 PPP1R26Q5T8A7 1209 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 RTL10Q7L3V2 364 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 STRADAQ7RTN6 431 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 TBC1D15Q8TC07 691 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 NCLNQ969V3 563 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 USB1Q9BQ65 265 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 BTBD2Q9BX70 525 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 OSBPL11Q9BXB4 747 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 RBM38Q9H0Z9 239 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 GOLGA2P5Q9HBQ8 144 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SYTL2Q9HCH5 934 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SALL4Q9UJQ4 1053 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 EDARQ9UNE0 448 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 AP4E1Q9UPM8 1137 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 RAD54BQ9Y620 910 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 SLC12A8A0AV02 714 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 CFLARO15519 480 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 NDUFS2O75306 463 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 NCF2P19878 526 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 OR1D2P34982 312 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 NR2C2P49116 596 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 HK2P52789 917 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 AP2S1P53680 142 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 ST8SIA6P61647 398 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 MGAT3Q09327 533 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ZNF177Q13360 481 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 ZNF235Q14590 738 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 AARS2Q5JTZ9 985 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 PLEKHG7Q6ZR37 379 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 C1orf74Q96LT6 269 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ZNF347Q96SE7 839 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 KCNN2Q9H2S1 579 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 EVLQ9UI08 416 aaPredicted RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 HCN4Q9Y3Q4 1203 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 KPNA5O15131 536 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 GRAP2O75791 330 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 PSKH1P11801 424 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ARL4CP56559 192 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SEMA3AQ14563 771 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 NRF1Q16656 503 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 TIGD5Q53EQ6 642 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 UBXN11Q5T124 520 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SLC26A9Q7LBE3 791 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 KATNAL2Q8IYT4 538 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 TEX47Q8TBZ9 253 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 KCTD13Q8WZ19 329 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 ARHGEF26Q96DR7 871 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SECISBP2Q96T21 854 aaKnown RBP9.8□□□□□ -0.84
USP54-205ENST00000424265 MNTQ99583 582 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 RNF39Q9H2S5 420 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 PAK5Q9P286 719 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 RIMKLBQ9ULI2 386 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 SNX8Q9Y5X2 465 aa9.8□□□□□ -0.84
USP54-205ENST00000424265 hCG_2039718K7EN88 272 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TRDMT1O14717 391 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms