RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DISP1Q96F81 1524 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ELOVL7A1L3X0 281 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 LRRC14BA6NHZ5 514 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 HOXB6P17509 224 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 RPL7AP62424 266 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 MPP2Q14168 576 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM214Q6NUQ4 689 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 SLC9A6Q92581 669 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 CIPCQ9C0C6 399 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 DHX33Q9H6R0 707 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 CASZ1Q86V15 1759 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 TNFRSF11BO00300 401 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 EGFRP00533 1210 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 IDH3AP50213 366 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ACOX1Q15067 660 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 WSCD2Q2TBF2 565 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 OR52J3Q8NH60 311 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 C18orf25Q96B23 403 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 COLEC11Q9BWP8 271 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 POPDC2Q9HBU9 364 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 SPON1Q9HCB6 807 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 MAT2BQ9NZL9 334 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 COMMD3Q9UBI1 195 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 CNOT6Q9ULM6 557 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 RBM7Q9Y580 266 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 RORCP51449 518 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 DNASE1L3Q13609 305 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PTPRNQ16849 979 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 XKR6Q5GH73 641 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 GALNTL5Q7Z4T8 443 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 LAPTM4BQ86VI4 370 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RIOX2Q8IUF8 465 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 MRPL45Q9BRJ2 306 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RIOX1Q9H6W3 641 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 SETD4Q9NVD3 440 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 LACTBL1A8MY62 500 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RNF225M0QZC1 329 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CHRM5P08912 532 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TAL1P17542 331 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PTPN1P18031 435 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 S100GP29377 79 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ICAM3P32942 547 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CBX5P45973 191 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CDH15P55291 814 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 FASTKD3Q14CZ7 662 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM132BQ14DG7 1078 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 EIF2S3LQ2VIR3 472 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ZBED5Q49AG3 693 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 BBS12Q6ZW61 710 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CCDC28AQ8IWP9 274 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TNFRSF25Q93038 417 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 BPIFA1Q9NP55 256 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 OR12D3Q9UGF7 316 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 H7C4K7 107 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PLIN3O60664 434 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 GPR1P46091 355 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 BCL2L1Q07817 233 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ARMC12Q5T9G4 340 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM139Q8IV31 216 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 LGI2Q8N0V4 545 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 FBXL16Q8N461 479 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ANKRD52Q8NB46 1076 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 EFHD2Q96C19 240 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RDH8Q9NYR8 311 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TAS2R1Q9NYW7 299 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM94Q12767 1356 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 C2P06681 752 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CD36P16671 472 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF517Q6ZMY9 492 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 LRRC55Q6ZSA7 311 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 MSANTD1Q6ZTZ1 278 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 OTOP1Q7RTM1 612 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF366Q8N895 744 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 MGAT4AQ9UM21 535 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PPIEQ9UNP9 301 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 MAU2Q9Y6X3 613 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 C17orf102A2RUQ5 167 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 SLC22A1O15245 554 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RPL3P39023 403 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 SMARCB1Q12824 385 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 CAMK1Q14012 370 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PSMD5Q16401 504 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 PPM1JQ5JR12 505 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 MRPS31Q92665 395 aaKnown RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 LGMNQ99538 433 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 NFKBIZQ9BYH8 718 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ASB8Q9H765 288 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 TBC1D17Q9HA65 648 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 RAB23Q9ULC3 237 aa11.82□□□□□ -0.52
SYNPO-202ENST00000394243 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
SYNPO-202ENST00000394243 C9JVG2 144 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ITGB1P05556 798 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 FMO3P31513 532 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 HNRNPH3P31942 346 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 MAN2A2P49641 1150 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ANXA8L1Q5VT79 327 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 METTL21CQ5VZV1 264 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 AKAP1Q92667 903 aaKnown RBP eCLIP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZFP3Q96NJ6 502 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 QTRT2Q9H974 415 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms