RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FAM124BQ9H5Z6 455 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CATSPERZQ9NTU4 200 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 MUC6Q6W4X9 2439 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GYG2O15488 501 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 LATO43561 262 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CCDC22O60826 627 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GABBR2O75899 941 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 NDST3O95803 873 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CYP17A1P05093 508 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 PYGBP11216 843 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CCNCP24863 283 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 AIF1P55008 147 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 MGAT5Q09328 741 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 RCN1Q15293 331 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 LRRC23Q53EV4 343 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 EGFLAMQ63HQ2 1017 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 TSSK4Q6SA08 328 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 TAF8Q7Z7C8 310 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CLP1Q92989 425 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 AHCYL2Q96HN2 611 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 COPS8Q99627 209 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 C1QTNF7Q9BXJ2 289 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CSNK1G1Q9HCP0 422 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 TMEM98Q9Y2Y6 226 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 LRRC72A6NJI9 287 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 C2CD4DB7Z1M9 353 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 NARSO43776 548 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 HAUS5O94927 633 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ITGAVP06756 1048 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 AMD1P17707 334 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 MAPK8P45983 427 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CD151P48509 253 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 NDST2P52849 883 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 DAB2P98082 770 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 LAMB3Q13751 1172 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 AMZ1Q400G9 498 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF648Q5T619 568 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 SNX30Q5VWJ9 437 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ENPP7Q6UWV6 458 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 NLRP9Q7RTR0 991 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 DENND6AQ8IWF6 608 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CYP4X1Q8N118 509 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 TERB1Q8NA31 727 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 WFDC5Q8TCV5 224 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CPT1BQ92523 772 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 UTP4Q969X6 686 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 SENP1Q9P0U3 644 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 PSMC3IPQ9P2W1 217 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 LGALS13Q9UHV8 139 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ACACAQ13085 2346 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 AP3B1O00203 1094 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 CACNB4O00305 520 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 BTN3A1O00481 513 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 TNFRSF10BO14763 440 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SDC3O75056 442 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MTA2O94776 668 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 NMBRP28336 390 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 KPNA2P52292 529 aaKnown RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ADGRE1Q14246 886 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SLC44A4Q53GD3 710 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 PRPF39Q86UA1 669 aaKnown RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MPP5Q8N3R9 675 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 OSCP1Q8WVF1 389 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SERAC1Q96JX3 654 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 KLF16Q9BXK1 252 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SLC25A51Q9H1U9 297 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 VCX3BQ9H321 246 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 VCX3AQ9NNX9 186 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ANLNQ9NQW6 1124 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 RNF112Q9ULX5 631 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ASF1AQ9Y294 204 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 STON1Q9Y6Q2 735 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 TDGQ13569 410 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MYLK3Q32MK0 819 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 TTLL9Q3SXZ7 439 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 CMPK2Q5EBM0 449 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 PCID2Q5JVF3 399 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 CD300LGQ6UXG3 332 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SETD3Q86TU7 594 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SLC41A1Q8IVJ1 513 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SKA1Q96BD8 255 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 OR2AG1Q9H205 316 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 DENND2DQ9H6A0 471 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 NPHS2Q9NP85 383 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 NDOR1Q9UHB4 597 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MUTYHQ9UIF7 546 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 PNMA8BQ9ULN7 279 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ERVW-1Q9UQF0 538 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 USP3Q9Y6I4 520 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MAGEA13PA6NCF6 341 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 TCEA3O75764 348 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 STAMBPO95630 424 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MPP1Q00013 466 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SERINC3Q13530 473 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ENDOVQ8N8Q3 282 aaKnown RBP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 ESAMQ96AP7 390 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 QKIQ96PU8 341 aaKnown RBP eCLIP10.29□□□□□ -0.76
COL6A3-205ENST00000392004 IL22Q9GZX6 179 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SLCO1B3Q9NPD5 702 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms