RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C12orf65Q9H3J6 166 aaKnown RBP18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 KCNK13Q9HB14 408 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 HPS4Q9NQG7 708 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 POLR3BQ9NW08 1133 aaPredicted RBP18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 DCTN4Q9UJW0 460 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 APPL1Q9UKG1 709 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 PPIL1Q9Y3C6 166 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 MTCH2Q9Y6C9 303 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 TRANK1O15050 2925 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 CCDC22O60826 627 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 SLC4A1P02730 911 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CYP2A6P11509 494 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 GRK2P25098 689 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TARSP26639 723 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 RAB10P61026 200 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 OVGP1Q12889 678 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 STX3Q13277 289 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 ITPRIPL2Q3MIP1 535 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 FNDC3BQ53EP0 1204 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 WASHC2DQ5SRD0 308 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TMEM215Q68D42 235 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 FAM45BPQ6NSW5 357 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 KIF2BQ8N4N8 673 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 GPATCH11Q8N954 259 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 OR2A12Q8NGT7 310 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 FAM45AQ8TCE6 357 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 FRS2Q8WU20 508 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CYB5D2Q8WUJ1 264 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 SLC7A6OSQ96CW6 309 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 SCRN2Q96FV2 425 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 NSL1Q96IY1 281 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CCDC68Q9H2F9 335 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 FBXO6Q9NRD1 293 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 IL36AQ9UHA7 158 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 HAO1Q9UJM8 370 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 SORCS3Q9UPU3 1222 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 ACOT9Q9Y305 439 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 SLC30A1Q9Y6M5 507 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CHD7Q9P2D1 2997 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 KIAA1549LQ6ZVL6 1849 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 DOCK8Q8NF50 2099 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 C1orf232A0A0U1RR37 186 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 EDDM13A0A1B0GTR0 161 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 GOLGA8CPA6NN73 597 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 BUD23O43709 281 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CTPS1P17812 591 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CALB2P22676 271 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 XPAP23025 273 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 COL19A1Q14993 1142 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CHI3L2Q15782 390 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TYSND1Q2T9J0 566 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TSNAXIP1Q2TAA8 658 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CERS6Q6ZMG9 384 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TPRG1Q6ZUI0 275 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 C12orf40Q86WS4 652 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 STK40Q8N2I9 435 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TERB1Q8NA31 727 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TTC8Q8TAM2 541 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CD248Q9HCU0 757 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 IL17CQ9P0M4 197 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 EPS15L1Q9UBC2 864 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 CDH22Q9UJ99 828 aa18.16■□□□□ 0.5
CCDC88C-203ENST00000389856 TTC34A8MYJ7 566 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 AURKAO14965 403 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 PLIN3O60664 434 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 NDUFS3O75489 264 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 S1PR4O95977 384 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 PRNPP04156 253 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 UGT2B4P06133 528 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 C2P06681 752 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 GABRB3P28472 473 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 GDI1P31150 447 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 MC4RP32245 332 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 HNF1BP35680 557 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 GTF2A1P52655 376 aaPredicted RBP18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 STC1P52823 247 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 KDSRQ06136 332 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 CACNG1Q06432 222 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 GRM2Q14416 872 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 LYPLAL1Q5VWZ2 237 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 LYSMD3Q7Z3D4 306 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 CMC1Q7Z7K0 106 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 CBARPQ8N350 705 aaPredicted RBP18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 MSLNLQ96KJ4 702 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 ANKRD27Q96NW4 1050 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 MCCC1Q96RQ3 725 aaPredicted RBP18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 KXD1Q9BQD3 176 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 RAD18Q9NS91 495 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 DKK3Q9UBP4 350 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 CD207Q9UJ71 328 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 COMMD10Q9Y6G5 202 aa18.15■□□□□ 0.5
CCDC88C-203ENST00000389856 TBC1D3BA6NDS4 549 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 TRIM24O15164 1050 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 APODP05090 189 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 ALPIP09923 528 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 MYL2P10916 166 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 SAT1P21673 171 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 GKP32189 559 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 GJA4P35212 333 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 PTPRNQ16849 979 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms