RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ETS2P15036 469 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF155Q12901 538 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TEAD2Q15562 447 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ANKRD26P1Q6NSI1 321 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 HAS1Q92839 578 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MFSD3Q96ES6 412 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SGSM3Q96HU1 749 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ARHGAP28Q9P2N2 729 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 XPR1Q9UBH6 696 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ADAM28Q9UKQ2 775 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 RAI2Q9Y5P3 530 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 YY2O15391 372 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SAGP10523 405 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 FAM98BQ52LJ0 330 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 UBAP2Q5T6F2 1119 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 LPCAT2Q7L5N7 544 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TMC3Q7Z5M5 1100 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 UBR7Q8N806 425 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ETNPPLQ8TBG4 499 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 APOLD1Q96LR9 279 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 FEM1AQ9BSK4 669 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CHIAQ9BZP6 476 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TRIM39Q9HCM9 518 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PSME2Q9UL46 239 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PPM1HQ9ULR3 514 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TULP2O00295 520 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TNFSF12O43508 249 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MAFO75444 373 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 AP2S1P53680 142 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ARF3P61204 181 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ARF1P84077 181 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CAP1Q01518 475 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SHISA6Q6ZSJ9 500 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MAGEC3Q8TD91 643 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 EPB41L4BQ9H329 900 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ADAP2Q9NPF8 381 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SMIM31A0A1B0GVY4 71 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MAGEA10P43363 369 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 BTN3A2P78410 334 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GRSF1Q12849 480 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 FASTKD3Q14CZ7 662 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF613Q6PF04 617 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 KLHL35Q6PF15 583 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 C1orf186Q6ZWK4 172 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 VSIG10LQ86VR7 867 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GRHL3Q8TE85 626 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SLC22A17Q8WUG5 538 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 RADILQ96JH8 1075 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GPR20Q99678 358 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 NOL11Q9H8H0 719 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF510Q9Y2H8 683 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PCDHB11Q9Y5F2 797 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GLOD5A6NK44 160 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 PSTPIP1O43586 416 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 OPN1LWP04000 364 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 SELPP16109 830 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 GLUD2P49448 558 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 MTA1Q13330 715 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 NTRK3Q16288 839 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 C15orf52Q6ZUT6 534 aaKnown RBP7.34□□□□□ -1.24
VPS13A-202ENST00000357409 DHFR2Q86XF0 187 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 AP2M1Q96CW1 435 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 FCRL4Q96PJ5 515 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 RNF39Q9H2S5 420 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 CYP3A43Q9HB55 503 aa7.34□□□□□ -1.24
VPS13A-202ENST00000357409 SMIM28A0A1B0GU29 152 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 CH25HO95992 272 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 SERPINB10P48595 397 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 DGKGP49619 791 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 MRPS5P82675 430 aaKnown RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 MEF2AQ02078 507 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 LRRC32Q14392 662 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 GANABQ14697 944 aaKnown RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 GPR68Q15743 365 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 COLEC12Q5KU26 742 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 TTYH2Q9BSA4 534 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 FTSJ1Q9UET6 329 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 PRDM15P57071 1507 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 A2ML1A8K2U0 1454 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 TCRBV7S2A1N4TA0A589 114 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 FAM149AA5PLN7 773 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 ZNF860A6NHJ4 632 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 FCHO1O14526 889 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 F10P00742 488 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 UQCRC1P31930 480 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 RAB8AP61006 207 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 C1DQ13901 141 aaKnown RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 PYDC2Q56P42 97 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 ULK3Q6PHR2 472 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 FOXRED2Q8IWF2 684 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 IL22RA1Q8N6P7 574 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 ENGASEQ8NFI3 743 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 ATAD3AQ9NVI7 634 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 KBTBD4Q9NVX7 518 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 GRIN2DO15399 1336 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 MMP20O60882 483 aa7.33□□□□□ -1.24
VPS13A-202ENST00000357409 PPP1R11O60927 126 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-202ENST00000357409 PSMD10O75832 226 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms