RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PRORSD1PA6NEY8 169 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 TRIM38O00635 465 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 TSPAN3O60637 253 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 CD160O95971 181 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 SNRPB2P08579 225 aaKnown RBP15.4■□□□□ 0.06
UPF3B-202ENST00000345865 PSMD8P48556 350 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 SLC11A2P49281 568 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 CCNHP51946 323 aaPredicted RBP15.4■□□□□ 0.06
UPF3B-202ENST00000345865 ELAVL2Q12926 359 aaKnown RBP15.4■□□□□ 0.06
UPF3B-202ENST00000345865 RALGDSQ12967 914 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 STX5Q13190 355 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 MED21Q13503 144 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 LAMB3Q13751 1172 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 ADGRE1Q14246 886 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 MMEL1Q495T6 779 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 LAYNQ6UX15 382 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 C16orf59Q7L2K0 433 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 GLT6D1Q7Z4J2 308 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 TICAM1Q8IUC6 712 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 FAM126BQ8IXS8 530 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 PIANPQ8IYJ0 282 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 CLYBLQ8N0X4 340 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 RHEBL1Q8TAI7 183 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 C2orf15Q8WU43 125 aaKnown RBP15.4■□□□□ 0.06
UPF3B-202ENST00000345865 DCUN1D1Q96GG9 259 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 PKP2Q99959 881 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 TDRD1Q9BXT4 1180 aaKnown RBP15.4■□□□□ 0.06
UPF3B-202ENST00000345865 POPDC3Q9HBV1 291 aa15.4■□□□□ 0.06
UPF3B-202ENST00000345865 CBX4O00257 560 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 TRIM24O15164 1050 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 RHOBTB1O94844 696 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 CORO1AP31146 461 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PEX19P40855 299 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 FOLH1Q04609 750 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 SLC8B1Q6J4K2 584 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 ZFP1Q6P2D0 407 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 TRPC4APQ8TEL6 797 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 BIRC8Q96P09 236 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 SLC39A3Q9BRY0 314 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 UNC93B1Q9H1C4 597 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 TFB2MQ9H5Q4 396 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 INTS10Q9NVR2 710 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 GMPR2Q9P2T1 348 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PIP5K1BO14986 540 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 OR1I1O60431 355 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 CLASP2O75122 1294 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 CRTAMO95727 393 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 EFEMP2O95967 443 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 FGF4P08620 206 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 GPX3P22352 226 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 NME5P56597 212 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 GRB7Q14451 532 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 TLR1Q15399 786 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 TSNQ15631 228 aaKnown RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 HECTD3Q5T447 861 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PSAPL1Q6NUJ1 521 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 C8orf82Q6P1X6 216 aaPredicted RBP15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PHYKPLQ8IUZ5 450 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 BBS5Q8N3I7 341 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 ASB9Q96DX5 294 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 SCLYQ96I15 445 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 LRCH3Q96II8 777 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 HHIPL1Q96JK4 782 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 SLC24A3Q9HC58 644 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PDP2Q9P2J9 529 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PCDHGB4Q9UN71 923 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 PCDHGB5Q9Y5G0 923 aa15.39■□□□□ 0.05
UPF3B-202ENST00000345865 CDC7O00311 574 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 SCAMP3O14828 347 aaKnown RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 NRP2O60462 931 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 DNAJA2O60884 412 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 CLDN11O75508 207 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 RNASEH2AO75792 299 aaKnown RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 RHOCP08134 193 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 IRF1P10914 325 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 HOXB8P17481 243 aaPredicted RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 ARF5P84085 180 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 ECT2LQ008S8 904 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 TRIM25Q14258 630 aaKnown RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 TAF1AQ15573 450 aaPredicted RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 CXorf57Q6NSI4 855 aaKnown RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 LINGO4Q6UY18 593 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 RETREG3Q86VR2 466 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 SPATA24Q86W54 205 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 ICA1LQ8NDH6 482 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 LPCAT1Q8NF37 534 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 PXYLP1Q8TE99 480 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 TWIST2Q8WVJ9 160 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 ATP6V1E2Q96A05 226 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 KIAA1191Q96A73 305 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 SLC45A3Q96JT2 553 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 GPR21Q99679 349 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 TMEM175Q9BSA9 504 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 SCUBE2Q9NQ36 999 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 MTRRQ9UBK8 725 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 CD300AQ9UGN4 299 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 AGO1Q9UL18 857 aaKnown RBP15.38■□□□□ 0.05
UPF3B-202ENST00000345865 ILVBLA1L0T0 632 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 C2orf78A6NCI8 922 aa15.38■□□□□ 0.05
UPF3B-202ENST00000345865 TXNDC9O14530 226 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms