RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PHF10Q8WUB8 498 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 S100ZQ8WXG8 99 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MARVELD3Q96A59 401 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 RTP4Q96DX8 246 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 C8orf48Q96LL4 319 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 AIFM2Q9BRQ8 373 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 C1QTNF7Q9BXJ2 289 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TCF7L2Q9NQB0 619 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NPAP1Q9NZP6 1156 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CXXC1Q9P0U4 656 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 UBA2Q9UBT2 640 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 COPG1Q9Y678 874 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TTC24A2A3L6 582 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 FADS2P1A8MWK0 482 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TLR3O15455 904 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SEC24DO94855 1032 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NDST3O95803 873 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ENO3P13929 434 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 RRM2P31350 389 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 OR3A3P47888 321 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 PPP5CP53041 499 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 AP2S1P53680 142 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 GCNT1Q02742 428 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 FPGSQ05932 587 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MMRN1Q13201 1228 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 BFSP2Q13515 415 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ZNF484Q5JVG2 852 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CCNYL2Q5T2Q4 361 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CLEC14AQ86T13 490 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CADM2Q8N3J6 435 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 KCTD17Q8N5Z5 321 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CNTD1Q8N815 330 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 FAM71DQ8N9W8 422 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TOR1AIP2Q8NFQ8 470 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 OR4M2Q8NGB6 313 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NSUN6Q8TEA1 469 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 RIT2Q99578 217 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MCMBPQ9BTE3 642 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NOL6Q9H6R4 1146 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 IL37Q9NZH6 218 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CNTN6Q9UQ52 1028 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 AUP1Q9Y679 476 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ISPDA4D126 451 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 ASB14A6NK59 587 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 TPP1O14773 563 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 SNPHO15079 494 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 NADKO95544 446 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 KRT1P04264 644 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CAPGP40121 348 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CCR10P46092 362 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 RALGDSQ12967 914 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 TAF5Q15542 800 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 XKR9Q5GH70 373 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 PPM1JQ5JR12 505 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 AGAP6Q5VW22 663 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 GDPD3Q7L5L3 318 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF677Q86XU0 584 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CAMK1DQ8IU85 385 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 LURAP1LQ8IV03 231 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 PLD6Q8N2A8 252 aaKnown RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CELF2-AS1Q8N7Q2 184 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 KIAA1958Q8N8K9 716 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 RDM1Q8NG50 284 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CHFRQ96EP1 664 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF560Q96MR9 790 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 AGAP4Q96P64 663 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF300Q96RE9 604 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 KIFC3Q9BVG8 833 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 FTHL17Q9BXU8 183 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 TRPV6Q9H1D0 765 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 HSPBP1Q9NZL4 362 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 GABBR1Q9UBS5 961 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 FBXO5Q9UKT4 447 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 HES2Q9Y543 173 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 PCDHB4Q9Y5E5 795 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 PSAT1Q9Y617 370 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 COL5A1P20908 1838 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 A0A0U1RQS6 177 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 AP3D1O14617 1153 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 AREL1O15033 823 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 FAM13AO94988 1023 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 SNAP29O95721 258 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 CHRNGP07510 517 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 MSL3P1P0C860 447 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 MMP8P22894 467 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 OXTRP30559 389 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 RFC2P35250 354 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 STX1BP61266 288 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 MTERF2Q49AM1 385 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 FAM102BQ5T8I3 360 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 NXNL2Q5VZ03 156 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 STEAP4Q687X5 459 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 TMC5Q6UXY8 1006 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 LEMD2Q8NC56 503 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 TMEM35BQ8NCS4 154 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 FAM83FQ8NEG4 500 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 BCL7CQ8WUZ0 217 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-202ENST00000339438 RASSF5Q8WWW0 418 aa5.58□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF516Q92618 1163 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms