RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PDIA2Q13087 525 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 ERCC6LQ2NKX8 1250 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 HENMT1Q5T8I9 393 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 ALS2CLQ60I27 953 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 ESRP1Q6NXG1 681 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 CES3Q6UWW8 571 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 CENPUQ71F23 418 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 ZNF765Q7L2R6 523 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 NLRP8Q86W28 1048 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 IGDCC3Q8IVU1 814 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 PELI3Q8N2H9 469 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 TMEM145Q8NBT3 493 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 PEX13Q92968 403 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 STAMBPL1Q96FJ0 436 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 EBNA1BP2Q99848 306 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 WDR83Q9BRX9 315 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 RIOK2Q9BVS4 552 aaKnown RBP22.09■■□□□ 1.13
SDC3-202ENST00000339394 RAD18Q9NS91 495 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 NFU1Q9UMS0 254 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 PLXND1Q9Y4D7 1925 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 CACNA1HO95180 2353 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 PSMA3P25788 255 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 NMBRP28336 390 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 AKT2P31751 481 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 ELK3P41970 407 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 DCDC1P59894 354 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 IRF4Q15306 451 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 LPAL2Q16609 132 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 ZDHHC20Q5W0Z9 365 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 TMEM135Q86UB9 458 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 PLA2G15Q8NCC3 412 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 DENND6BQ8NEG7 585 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 C1orf216Q8TAB5 229 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 LRRC39Q96DD0 335 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 CDKN2AIPNLQ96HQ2 116 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 AGAP2Q99490 1192 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 FOXP3Q9BZS1 431 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 MIR1-1HGQ9H1L0 117 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 KCNH6Q9H252 994 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 TREX1Q9NSU2 369 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 NFKBIL1Q9UBC1 381 aaPredicted RBP22.08■■□□□ 1.13
SDC3-202ENST00000339394 MTRF1LQ9UGC7 380 aaKnown RBP22.08■■□□□ 1.13
SDC3-202ENST00000339394 FKBPLQ9UIM3 349 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 CA5BQ9Y2D0 317 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 TEX264Q9Y6I9 313 aa22.08■■□□□ 1.13
SDC3-202ENST00000339394 FAM237BA0A1B0GVD1 139 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 K7ESM1 405 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 PCCBP05166 539 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 SPAM1P38567 509 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 ARSDP51689 593 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 PTPN5P54829 565 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 CLDN2P57739 230 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 ACVR1Q04771 509 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 INPP5AQ14642 412 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 FASTKD3Q14CZ7 662 aaKnown RBP22.08■■□□□ 1.12
SDC3-202ENST00000339394 PNCKQ6P2M8 343 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 CCDC25Q86WR0 208 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 ZBED8Q8IZ13 594 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 ATOH1Q92858 354 aaPredicted RBP22.08■■□□□ 1.12
SDC3-202ENST00000339394 TBATAQ96M53 351 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 FMO2Q99518 471 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 PHACTR1Q9C0D0 580 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 IRF2BPLQ9H1B7 796 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 SUDS3Q9H7L9 328 aaPredicted RBP22.08■■□□□ 1.12
SDC3-202ENST00000339394 RPS6KL1Q9Y6S9 549 aa22.08■■□□□ 1.12
SDC3-202ENST00000339394 POM121BA6NF01 834 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 H0Y8X5 98 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 GAPDHSO14556 408 aaPredicted RBP22.07■■□□□ 1.12
SDC3-202ENST00000339394 EIF3HO15372 352 aaKnown RBP eCLIP22.07■■□□□ 1.12
SDC3-202ENST00000339394 SOD1P00441 154 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 IGFALSP35858 605 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 XIAPP98170 497 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 STAT4Q14765 748 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 FAM151BQ6UXP7 276 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 KDM7AQ6ZMT4 941 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 ANKMY2Q8IV38 441 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 BMFQ96LC9 184 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 SLC6A18Q96N87 628 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 NAT9Q9BTE0 207 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 SAYSD1Q9NPB0 183 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 APPL1Q9UKG1 709 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 CHMP2BQ9UQN3 213 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 HS3ST3A1Q9Y663 406 aa22.07■■□□□ 1.12
SDC3-202ENST00000339394 TRPM6Q9BX84 2022 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 GLYATL1P3A0A0U1RQE8 302 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 H7C0S8 307 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 FPGTO14772 594 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 PGAM1P18669 254 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 RACK1P63244 317 aaKnown RBP22.06■■□□□ 1.12
SDC3-202ENST00000339394 PEX6Q13608 980 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 ANKRD20A4Q4UJ75 823 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 RAET1GQ6H3X3 334 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 GCNT7Q6ZNI0 430 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 FBXO36Q8NEA4 188 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 DTX3LQ8TDB6 740 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 HDAC10Q969S8 669 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 FCRL3Q96P31 734 aaPredicted RBP22.06■■□□□ 1.12
SDC3-202ENST00000339394 ZSCAN5AQ9BUG6 496 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 SPATA16Q9BXB7 569 aa22.06■■□□□ 1.12
SDC3-202ENST00000339394 TMEM74BQ9NUR3 256 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms