RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ICAM3P32942 547 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 RPL7AP62424 266 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 TOP3AQ13472 1001 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 DEFB115Q30KQ5 88 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 PIK3R6Q5UE93 754 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 NEK5Q6P3R8 708 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ZNF730Q6ZMV8 503 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CATSPERGQ6ZRH7 1159 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 GHDCQ8N2G8 530 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 OR5B17Q8NGF7 314 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 EXOSC8Q96B26 276 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 RNF31Q96EP0 1072 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 L2HGDHQ9H9P8 463 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 SSR3Q9UNL2 185 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 HAT1O14929 419 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CASKO14936 926 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 SUV39H1O43463 412 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 KCNA5P22460 613 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CAPSQ13938 189 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 SMCO1Q147U7 214 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 RGS21Q2M5E4 152 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CCNYL2Q5T2Q4 361 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ABRAXAS1Q6UWZ7 409 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 GK5Q6ZS86 529 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 OTOP3Q7RTS5 596 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ADGRG6Q86SQ4 1221 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 EPS8L1Q8TE68 723 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 NKD1Q969G9 470 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 DHRS1Q96LJ7 313 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 B3GNT5Q9BYG0 378 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CHMP1AQ9HD42 196 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 SNX15Q9NRS6 342 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 BLOC1S4Q9NUP1 217 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 MORF4L1Q9UBU8 362 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 EVLQ9UI08 416 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 CORO2BQ9UQ03 480 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CHD1O14646 1710 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 G3V2T6 193 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 PAGE1O75459 146 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ZNF432O94892 652 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 EPHX1P07099 455 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 RABGGTBP53611 331 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ST3GAL1Q11201 340 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ZBTB6Q15916 424 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 TTMPQ5BVD1 217 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 APOBEC3HQ6NTF7 200 aaKnown RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 RFWD3Q6PCD5 774 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 FAM131AQ6UXB0 335 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CHST4Q8NCG5 386 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 PTCD2Q8WV60 388 aaKnown RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 XAGE5Q8WWM1 108 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 KCNE2Q9Y6J6 123 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ITGA2BP08514 1039 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 RYKP34925 604 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 OAZ1P54368 228 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 PDK3Q15120 406 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 LSM12Q3MHD2 195 aaKnown RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 OR52J3Q8NH60 311 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 KLK6Q92876 244 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 FCRL2Q96LA5 508 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 TBATAQ96M53 351 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 CITED4Q96RK1 184 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 OR2AG2A6NM03 316 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 EPHB6O15197 1021 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 TRBC1P01850 177 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 UGT2B4P06133 528 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 YAP1P46937 504 aaKnown RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 GALK1P51570 392 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 FOXM1Q08050 763 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 FUKQ8N0W3 1084 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 LNX1Q8TBB1 728 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 COX4I2Q96KJ9 171 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 MTMR9Q96QG7 549 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 MRPL57Q9BQC6 102 aaKnown RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 CASZ1Q86V15 1759 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ZNF879B4DU55 563 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 USP50Q70EL3 339 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 CHSY3Q70JA7 882 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ZNF557Q8N988 423 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 FATE1Q969F0 183 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 GAS2L1Q99501 681 aaPredicted RBP12.6□□□□□ -0.39
SDC3-201ENST00000336798 COPS8Q99627 209 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 C1QTNF1Q9BXJ1 281 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 NMUR1Q9HB89 426 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 PLGRKTQ9HBL7 147 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 ADGRE2Q9UHX3 823 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 FBXW2Q9UKT8 454 aa12.6□□□□□ -0.39
SDC3-201ENST00000336798 GNB5O14775 395 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 AZIN1O14977 448 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SEPT4O43236 478 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 FKTNO75072 461 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 VIPP01282 170 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 APODP05090 189 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 EFNA1P20827 205 aaPredicted RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 SLC30A6Q6NXT4 461 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 FAM35AQ86V20 835 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CIR1Q86X95 450 aaPredicted RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 RIOX2Q8IUF8 465 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 UBR7Q8N806 425 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ADAMTS15Q8TE58 950 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms