RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SLC25A41Q8N5S1 370 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 OR4C6Q8NH72 309 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 LMX1AQ8TE12 382 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 SCAMP4Q969E2 229 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 TSACCQ96A04 125 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-201ENST00000332345 PBKQ96KB5 322 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 CNDP2Q96KP4 475 aaKnown RBP13.97□□□□□ -0.17
LIMS1-201ENST00000332345 HOMER3Q9NSC5 361 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 UCKL1Q9NWZ5 548 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 TRMT1Q9NXH9 659 aaKnown RBP13.97□□□□□ -0.17
LIMS1-201ENST00000332345 NLGN3Q9NZ94 848 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 HACD3Q9P035 362 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 SHOC2Q9UQ13 582 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 ZKSCAN5Q9Y2L8 839 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 DGKBQ9Y6T7 804 aa13.97□□□□□ -0.17
LIMS1-201ENST00000332345 GOLGA4Q13439 2230 aaKnown RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 MED19A0JLT2 244 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 TMEM202A6NGA9 273 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ENC1O14682 589 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 TPP1O14773 563 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 AGTP01019 485 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 FGGP02679 453 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 FGF1P05230 155 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ATXN1LP0C7T5 689 aaKnown RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 PIRTP0C851 137 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 PSMB4P28070 264 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 CXCR5P32302 372 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ELOCQ15369 112 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 CCNG2Q16589 344 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ALG11Q2TAA5 492 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 RANBP10Q6VN20 620 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 PELI3Q8N2H9 469 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ZNF548Q8NEK5 533 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 C1orf54Q8WWF1 131 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 SCG3Q8WXD2 468 aaKnown RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ATG4AQ8WYN0 398 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 HIC2Q96JB3 615 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 RIOK2Q9BVS4 552 aaKnown RBP13.96□□□□□ -0.17
LIMS1-201ENST00000332345 LGR4Q9BXB1 951 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 EVA1BQ9NVM1 165 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 DOLKQ9UPQ8 538 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 ZNF711Q9Y462 761 aa13.96□□□□□ -0.17
LIMS1-201ENST00000332345 COL5A1P20908 1838 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 LMO7DNF2Z398 122 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 TRIM38O00635 465 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 FFAR2O15552 330 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 SIGLEC6O43699 453 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 ANXA6P08133 673 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 FTH1P19P0C7X4 201 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 CDK4P11802 303 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 CKMT2P17540 419 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 CDK3Q00526 305 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 CCDC173Q0VFZ6 552 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 SNX1Q13596 522 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 OASLQ15646 514 aaKnown RBP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 LONRF2Q1L5Z9 754 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 P3H1Q32P28 736 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 LVRNQ6Q4G3 990 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 RBFAQ8N0V3 343 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 GLMNQ92990 594 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 RTP4Q96DX8 246 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 FICDQ9BVA6 458 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 TCEAL2Q9H3H9 227 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 NCKIPSDQ9NZQ3 722 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 MOSPD1Q9UJG1 213 aa13.95□□□□□ -0.18
LIMS1-201ENST00000332345 PNMA8BQ9ULN7 279 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 DRG1Q9Y295 367 aaKnown RBP13.95□□□□□ -0.18
LIMS1-201ENST00000332345 PRSS38A1L453 326 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 PPFIA2O75334 1257 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 IFNB1P01574 187 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 CEACAM5P06731 702 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 ADRA1AP35348 466 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 HMGCLP35914 325 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 CHRNA4P43681 627 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 DUSP3P51452 185 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-201ENST00000332345 DCDC1P59894 354 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 C1orf61Q13536 156 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 HENMT1Q5T8I9 393 aaKnown RBP13.94□□□□□ -0.18
LIMS1-201ENST00000332345 ZDHHC20Q5W0Z9 365 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 ZCCHC8Q6NZY4 707 aaKnown RBP13.94□□□□□ -0.18
LIMS1-201ENST00000332345 DRICH1Q6PGQ1 229 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-201ENST00000332345 GLT6D1Q7Z4J2 308 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 SLCO6A1Q86UG4 719 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 GKN2Q86XP6 184 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 SLC35F6Q8N357 371 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 CCDC89Q8N998 374 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 FAM181AQ8N9Y4 354 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 BLOC1S5Q8TDH9 187 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 OR1E3Q8WZA6 343 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 EID2BQ96D98 161 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 WDR24Q96S15 920 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 NAP1L3Q99457 506 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-201ENST00000332345 GORASP1Q9BQQ3 440 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 ZSCAN5AQ9BUG6 496 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 LRRC61Q9BV99 259 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 SPATA16Q9BXB7 569 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 ARNT2Q9HBZ2 717 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 CYP4F12Q9HCS2 524 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 FEZ2Q9UHY8 353 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms