RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RPS9P46781 194 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 POLR2JP52435 117 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 AP1S1P61966 158 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 AP5B1Q2VPB7 878 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FNDC3BQ53EP0 1204 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 LRRC69Q6ZNQ3 347 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CHMP1AQ9HD42 196 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF639Q9UID6 485 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 KANTRA0A1W2PQU2 76 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ATP6V1G1O75348 118 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 GCATO75600 419 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SNAPC5O75971 98 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FGBP02675 491 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CCNCP24863 283 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PTX3P26022 381 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 AXLP30530 894 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 HUNKP57058 714 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 LACTB2Q53H82 288 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PPM1LQ5SGD2 360 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 LAPTM4BQ86VI4 370 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SPPL2CQ8IUH8 684 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TMEM86AQ8N2M4 240 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 GPATCH1Q9BRR8 931 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 MROH8Q9H579 483 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ZDHHC6Q9H6R6 413 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FAM205AQ6ZU69 1335 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PRR36Q9H6K5 1346 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PNPLA6Q8IY17 1366 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PRKD3O94806 890 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SAGP10523 405 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PPP4CP60510 307 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 NFIXQ14938 502 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CCNYL2Q5T2Q4 361 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FRRS1Q6ZNA5 592 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 METTL3Q86U44 580 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TRABD2AQ86V40 505 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FDXACB1Q9BRP7 624 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TMEM168Q9H0V1 697 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ATP13A3Q9H7F0 1226 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 C3orf14Q9HBI5 128 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ARL8BQ9NVJ2 186 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 KCNE2Q9Y6J6 123 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TGFB3P10600 412 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 RORCP51449 518 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 USP4Q13107 963 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ACVR2BQ13705 512 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TOP1MTQ969P6 601 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 MND1Q9BWT6 205 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TMEM39BQ9GZU3 492 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 XKR8Q9H6D3 395 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SETD4Q9NVD3 440 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 FRMPD4Q14CM0 1322 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 CCL15-CCL14A0A0B4J2E2 113 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TCRBV9S1A1TA0A576 114 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 PRDX6P30041 224 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 RBM34P42696 430 aaKnown RBP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 CCL15Q16663 113 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TMEM119Q4V9L6 283 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 GLYATQ6IB77 296 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ADNP2Q6IQ32 1131 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ARMC10Q8N2F6 343 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 DENND6BQ8NEG7 585 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 OR2L3Q8NG85 312 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SLC35C1Q96A29 364 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SLC22A4Q9H015 551 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 HPF1Q9NWY4 346 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 GPN3Q9UHW5 284 aaPredicted RBP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 VPS26BQ4G0F5 336 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SATL1Q86VE3 508 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 DNERQ8NFT8 737 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 CENPNQ96H22 339 aaPredicted RBP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 FAM86B1E9PN63 330 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ADAMDEC1O15204 470 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 RLN2P04090 185 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TPTEP56180 551 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 OR2B6P58173 313 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 MYOZ2Q9NPC6 264 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 PLLPQ9Y342 182 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ALG5Q9Y673 324 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 KPNA3O00505 521 aaPredicted RBP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 NKRFO15226 690 aaKnown RBP eCLIP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 OR7A10O76100 309 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 TMC8Q8IU68 726 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 GPR65Q8IYL9 337 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 PDE10AQ9Y233 779 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 BICRAQ9NZM4 1560 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 FABP12A6NFH5 140 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 BPGMP07738 259 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 RPL22P35268 128 aaKnown RBP13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SLC12A3P55017 1021 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 NPNTQ6UXI9 565 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 CNTD1Q8N815 330 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 SNX33Q8WV41 574 aa13.84□□□□□ -0.19
CSPG4-201ENST00000308508 ASMTP46597 345 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 SLC27A1Q6PCB7 646 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 KCTD8Q6ZWB6 473 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 OR52K2Q8NGK3 314 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 CCDC107Q8WV48 283 aa13.83□□□□□ -0.19
CSPG4-201ENST00000308508 DHX33Q9H6R0 707 aaKnown RBP13.83□□□□□ -0.19
CSPG4-201ENST00000308508 TSPAN8P19075 237 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms