RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PDSS2Q86YH6 399 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MFSD2AQ8NA29 543 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF671Q8TAW3 534 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NMD3Q96D46 503 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CXorf40BQ96DE9 158 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 BAIAP2Q9UQB8 552 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 UGT2A1Q9Y4X1 527 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PCDHB9Q9Y5E1 797 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 F5H6K3 240 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PDE2AO00408 941 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 BTN3A3O00478 584 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TPPPO94811 219 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PRKCBP05771 671 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RNH1P13489 461 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF7P17097 686 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NUDT1P36639 197 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ELK3P41970 407 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GTF2IP78347 998 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 EPHA10Q5JZY3 1008 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GRHL2Q6ISB3 625 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CATSPER4Q7RTX7 472 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 LYSMD3Q7Z3D4 306 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 STK32CQ86UX6 486 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SPARTQ8N0X7 666 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ANKFN1Q8N957 763 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 KIAA1143Q96AT1 154 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TMA16Q96EY4 203 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MCEEQ96PE7 176 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ACOX2Q99424 681 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MAPKAP1Q9BPZ7 522 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 JMJD4Q9H9V9 463 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 C1orf109Q9NX04 203 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 QPCTLQ9NXS2 382 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 AASSQ9UDR5 926 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 DPP7Q9UHL4 492 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SSR3Q9UNL2 185 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TELO2Q9Y4R8 837 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 H0YGN5 161 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NRP2O60462 931 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CYP7B1O75881 506 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CYB5AP00167 134 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 A1BGP04217 495 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CDH1P12830 882 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NOS2P35228 1153 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RBM34P42696 430 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 KCNJ2P63252 427 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CNTN2Q02246 1040 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 FUT2Q10981 343 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 OCLNQ16625 522 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PGBD2Q6P3X8 592 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MTFR2Q6P444 385 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ZYG11AQ6WRX3 759 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 BEND5Q7L4P6 421 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ERMP1Q7Z2K6 904 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 FAM126BQ8IXS8 530 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 UHMK1Q8TAS1 419 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 DHX35Q9H5Z1 703 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RERGLQ9H628 205 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC86Q9H6F5 360 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ANKRA2Q9H9E1 313 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NUDT4Q9NZJ9 180 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NUP50Q9UKX7 468 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF232Q9UNY5 417 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SLC9A8Q9Y2E8 581 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NFS1Q9Y697 457 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RPTORQ8N122 1335 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SH3D21A4FU49 640 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NAP1L6A6NFF2 107 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ACKR2O00590 384 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CYP2D6P10635 497 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PRKCHP24723 683 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ACSM2AQ08AH3 577 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 C2orf80Q0P641 193 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 C15orf59Q2T9L4 293 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 LCN1P1Q5VSP4 162 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 STYK1Q6J9G0 422 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC69Q6ZNQ3 347 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KCNMB4Q86W47 210 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 AMIGO1Q86WK6 493 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RBFAQ8N0V3 343 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF276Q8N554 614 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SIMC1Q8NDZ2 872 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DENND1AQ8TEH3 1009 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SPACA7Q96KW9 195 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC3Q9BY71 257 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 POLR1BQ9H9Y6 1135 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FOLH1BQ9HBA9 442 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FANCFQ9NPI8 374 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 REXO2Q9Y3B8 237 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PROM1O43490 865 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SERPINF2P08697 491 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KDELR1P24390 212 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 S100A12P80511 92 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MOGSQ13724 837 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 POLD3Q15054 466 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NOMO1Q15155 1222 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 LSM12Q3MHD2 195 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 COLEC12Q5KU26 742 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms