RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GJB5O95377 273 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 FAM153BP0C7A2 387 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3HP0C7X1 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ETS1P14921 441 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 RPL17P18621 184 aaKnown RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 GRIA2P42262 883 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 GLRBP48167 497 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 AP1S2P56377 157 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TRIM32Q13049 653 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 DLG2Q15700 870 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 FAM153CQ494X1 144 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 HSF5Q4G112 596 aaPredicted RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 WDR45BQ5MNZ6 344 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3GQ6DHY5 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3CQ6IPX1 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 FKBP9P1Q75LS8 142 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3Q8IZP1 549 aaPredicted RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 CCDC33Q8N5R6 958 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 OR7D4Q8NG98 312 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ZBTB9Q96C00 473 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 CHKBQ9Y259 395 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 GPSM3Q9Y4H4 160 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 AMD1P17707 334 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 CMPK1P30085 196 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 DSC2Q02487 901 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 RFWD3Q6PCD5 774 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TPRG1Q6ZUI0 275 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ZNF280BQ86YH2 543 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 OR4K2Q8NGD2 314 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 LINGO1Q96FE5 620 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 NAF1Q96HR8 494 aaKnown RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 FAM83CQ9BQN1 747 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 FAM155AB1AL88 458 aaPredicted RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 EIF3FO00303 357 aaPredicted RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 RRM2P31350 389 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 IFNGR2P38484 337 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 CSNK1DP48730 415 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 KCNJ11Q14654 390 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 ADRM1Q16186 407 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 GSTA3Q16772 222 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 SYPL2Q5VXT5 272 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 AADACL2Q6P093 401 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 CHSY3Q70JA7 882 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 NAT8LQ8N9F0 302 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 UGT2B28Q9BY64 529 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 DNAJC28Q9NX36 388 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 LEF1Q9UJU2 399 aaPredicted RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 TUBGCP6Q96RT7 1819 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 HMGB3O15347 200 aaKnown RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 RHOP08100 348 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 IL1RL1Q01638 556 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 TEAD2Q15562 447 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 ATP13A5Q4VNC0 1218 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 C17orf64Q86WR6 236 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 TEX9Q8N6V9 391 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 RIT1Q92963 219 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 MRTO4Q9UKD2 239 aaKnown RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 CROTQ9UKG9 612 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 HDAC3O15379 428 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 TSPAN6O43657 245 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 CHRNB3Q05901 458 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 SOX4Q06945 474 aaPredicted RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 DSC1Q08554 894 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 SF3A3Q12874 501 aaKnown RBP eCLIP13.62□□□□□ -0.239e-7■■□□□ 13.7
LDLR-201ENST00000252444 OASLQ15646 514 aaKnown RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 RFTN2Q52LD8 501 aaPredicted RBP13.62□□□□□ -0.23
LDLR-201ENST00000252444 TTLL2Q9BWV7 592 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 SPHK2Q9NRA0 654 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 TEKT2Q9UIF3 430 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 CCDC154A6NI56 674 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 SLC16A5O15375 505 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 PDE9AO76083 593 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 EPS8Q12929 822 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 BNIP2Q12982 314 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 DGKKQ5KSL6 1271 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 LRRC4CQ9HCJ2 640 aa13.62□□□□□ -0.23
LDLR-201ENST00000252444 ULK1O75385 1050 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 CXCL10P02778 98 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 GDI1P31150 447 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 CLK3P49761 638 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 TRIM69Q86WT6 500 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ZSCAN18Q8TBC5 510 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 DCAKDQ8WVC6 231 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 SH3GL2Q99962 352 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 CCSER2Q9H7U1 834 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 USP29Q9HBJ7 922 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ZNHIT2Q9UHR6 403 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 R3HDM2Q9Y2K5 976 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 TDRKHQ9Y2W6 561 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 TCHHQ07283 1943 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 MYH15Q9Y2K3 1946 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 PRAMEF1O95521 474 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 DLDP09622 509 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 HRH2P25021 359 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 S100A3P33764 101 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 SLC7A9P82251 487 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ZNHIT3Q15649 155 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 CYP51A1Q16850 503 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 SGO1Q5FBB7 561 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 PITRM1Q5JRX3 1037 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms