RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 C7orf26Q96N11 449 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 B3GNT5Q9BYG0 378 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CASZ1Q86V15 1759 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 H3BNH8 94 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SERPINA1P01009 418 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 GABRR2P28476 465 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 TAF10Q12962 218 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 HSDL1Q3SXM5 330 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 HECTD2Q5U5R9 776 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 ERICH5Q6P6B1 374 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CLNKQ7Z7G1 428 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 ADGRG2Q8IZP9 1017 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 KLRG1Q96E93 195 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 PLEKHG4BQ96PX9 1271 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 COMMD9Q9P000 198 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 PCDHGC3Q9UN70 934 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 HBS1LQ9Y450 684 aaKnown RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CCDC182A6NF36 153 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 MDM4O15151 490 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 LRATO95237 230 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CCNIQ14094 377 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 NR1D2Q14995 579 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 HGSNATQ68CP4 663 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CDH24Q86UP0 819 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CLIP3Q96DZ5 547 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 MUC13Q9H3R2 512 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SEMA3GQ9NS98 782 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 TRPS1Q9UHF7 1281 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 GRM6O15303 877 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 TEX28O15482 410 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CCNDBP1O95273 360 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 C4BPAP04003 597 aaKnown RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 MANFP55145 182 aaKnown RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 RGMBQ6NW40 437 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 KLHL35Q6PF15 583 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 LEMD2Q8NC56 503 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 GSTCDQ8NEC7 633 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SLC47A1Q96FL8 570 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 TDRD1Q9BXT4 1180 aaKnown RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 OXCT2Q9BYC2 517 aaPredicted RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 GTPBP1O00178 669 aaKnown RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 CDH5P33151 784 aaPredicted RBP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SSR2P43308 183 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 ASMTP46597 345 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SEMA5AQ13591 1074 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 DENND5AQ6IQ26 1287 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 OR4K2Q8NGD2 314 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 QKIQ96PU8 341 aaKnown RBP eCLIP13.54□□□□□ -0.24
SF3A1-201ENST00000215793 RHOBTB2Q9BYZ6 727 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 ERVK-5Q9HDB9 667 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 ABCB10Q9NRK6 738 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 TBC1D14Q9P2M4 693 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 RPTORQ8N122 1335 aa13.54□□□□□ -0.24
SF3A1-201ENST00000215793 SLC28A2O43868 658 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 LCA5LO95447 670 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CCNE2O96020 404 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GLUD1P00367 558 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 KIR3DL1P43629 444 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CCT3P49368 545 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 LSM3P62310 102 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 NOGQ13253 232 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 QPRTQ15274 297 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 MPPE1Q53F39 396 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 PPP1R13LQ8WUF5 828 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 FERD3LQ96RJ6 166 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 AARSD1Q9BTE6 412 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 AASDHPPTQ9NRN7 309 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 DNAJC11Q9NVH1 559 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 ZNF180Q9UJW8 692 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 R3HDM2Q9Y2K5 976 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 PREX1Q8TCU6 1659 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GLYATL1P3A0A0U1RQE8 302 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 AP2A1O95782 977 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CDKN2BP42772 138 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 PTPN9P43378 593 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GBE1Q04446 702 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 DUSP4Q13115 394 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 DLG2Q15700 870 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 MON1BQ7L1V2 547 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 RAVER1Q8IY67 606 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 STYXQ8WUJ0 223 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 NIFKQ9BYG3 293 aaKnown RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 RAPGEFL1Q9UHV5 662 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 ADGRE2Q9UHX3 823 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 G3V2T6 193 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 GSC2O15499 205 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 IFNGP01579 166 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 TRBC1P01850 177 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CHRNGP07510 517 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CCNCP24863 283 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 UGT1A5P35504 534 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CBX2Q14781 532 aaPredicted RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 RPTNQ6XPR3 784 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 DEF8Q6ZN54 512 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 CCDC185Q8N715 623 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 AIF1LQ9BQI0 150 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 WDR55Q9H6Y2 383 aaPredicted RBP13.53□□□□□ -0.24
SF3A1-201ENST00000215793 PCDHGB3Q9Y5G1 929 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 A0A1W2PQH9 124 aa13.53□□□□□ -0.24
SF3A1-201ENST00000215793 AHCYL1O43865 530 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms