RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 A0A0G2JPF8 293 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HNRNPCL3B7ZW38 293 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HNRNPCL4P0DMR1 293 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TYMPP19971 482 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 AMPD1P23109 780 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 SOX9P48436 509 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 MECP2P51608 486 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FOXM1Q08050 763 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CSHL1Q14406 222 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PDK3Q15120 406 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HJURPQ8NCD3 748 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FAM129BQ96TA1 746 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NPAS2Q99743 824 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 ZYG11BQ9C0D3 744 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 DAGLAQ9Y4D2 1042 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 POLEQ07864 2286 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PTPRJQ12913 1337 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CLDN4O14493 209 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NCK2O43639 380 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HLA-DQA2P01906 255 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FDPSP14324 419 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TPSB2P20231 275 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HNRNPH3P31942 346 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CRHR1P34998 444 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 IDH2P48735 452 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TPSAB1Q15661 275 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NEDD8Q15843 81 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 OTUD3Q5T2D3 398 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PQLC1Q8N2U9 271 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 OR4C6Q8NH72 309 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NXPE2Q96DL1 559 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CDADC1Q9BWV3 514 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TDP2O95551 362 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FAM228BP0C875 321 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NDUFS1P28331 727 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 ECHS1P30084 290 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 MPP1Q00013 466 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NEPROQ6NW34 567 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 SYVN1Q86TM6 617 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CENPNQ96H22 339 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CDRT15Q96T59 188 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CBWD1Q9BRT8 395 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NUSAP1Q9BXS6 441 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TMEM184CQ9NVA4 438 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 GIN1Q9NXP7 522 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 HACL1Q9UJ83 578 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FADS3Q9Y5Q0 445 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 IQSEC2Q5JU85 1478 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 DCXO43602 365 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PEX14O75381 377 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NDUFB10O96000 172 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CST1P01037 141 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PRPS2P11908 318 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 VARSP26640 1264 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 GRK5P34947 590 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 RPS9P46781 194 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CPTPQ5TA50 214 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 LHX5Q9H2C1 402 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 INTS10Q9NVR2 710 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 SEC14L3Q9UDX4 400 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 NUFIP1Q9UHK0 495 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PTCH2Q9Y6C5 1203 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 WASHC1A8K0Z3 465 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 WASH3PC4AMC7 463 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PTGES3LE9PB15 166 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FOXN3O00409 490 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TSPAN1O60635 241 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 SCELO95171 688 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 FADS2O95864 444 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 BUD31P41223 144 aaPredicted RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 ZNF33AQ06730 810 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PTP4A2Q12974 167 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CBFBQ13951 182 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 E2F2Q14209 437 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 GRB14Q14449 540 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 AP5B1Q2VPB7 878 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TTMPQ5BVD1 217 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 PITRM1Q5JRX3 1037 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 GLRA4Q5JXX5 417 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 WASH2PQ6VEQ5 465 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 CYB5R4Q7L1T6 521 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 EPS8L3Q8TE67 593 aaKnown RBP6.07□□□□□ -1.44
VPS13D-201ENST00000011700 ELMO1Q92556 727 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 SPOCK2Q92563 424 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 YME1L1Q96TA2 773 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TNFSF13BQ9Y275 285 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TRPV2Q9Y5S1 764 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TECPR2O15040 1411 aa6.07□□□□□ -1.44
VPS13D-201ENST00000011700 TOGARAM1Q9Y4F4 1720 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 A0A0J9YVX5 310 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 ZNF185O15231 689 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 KRT33AO76009 404 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 MYCP01106 439 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-201ENST00000011700 ARL6IP1Q15041 203 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 PIK3R6Q5UE93 754 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 C1orf189Q5VU69 101 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 VSTM1Q6UX27 236 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 TDRPQ86YL5 185 aa6.06□□□□□ -1.44
VPS13D-201ENST00000011700 ARHGAP12Q8IWW6 846 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms