RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ISCA1Q9BUE6 129 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 TMEM160Q9NX00 188 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 DDX43Q9NXZ2 648 aaKnown RBP4.03□□□□□ -1.76
CD44-239ENST00000639002 SLC25A10Q9UBX3 287 aaPredicted RBP4.03□□□□□ -1.76
CD44-239ENST00000639002 FAM96BQ9Y3D0 163 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 KIAA1210Q9ULL0 1709 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 EDIL3O43854 480 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 IL15P40933 162 aaPredicted RBP4.02□□□□□ -1.77
CD44-239ENST00000639002 VEGFCP49767 419 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 RAD23BP54727 409 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 ISL1P61371 349 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 UBE3AQ05086 875 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.02□□□□□ -1.77
CD44-239ENST00000639002 NFIL3Q16649 462 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 GPATCH4Q5T3I0 446 aaKnown RBP4.02□□□□□ -1.77
CD44-239ENST00000639002 TRNP1Q6NT89 227 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 LCTLQ6UWM7 567 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 ZNF852Q6ZMS4 543 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 ASB18Q6ZVZ8 466 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 WDSUB1Q8N9V3 476 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 HUS1BQ8NHY5 278 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 RPS6KC1Q96S38 1066 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 CMKLR1Q99788 373 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 INTS2Q9H0H0 1204 aaKnown RBP4.02□□□□□ -1.77
CD44-239ENST00000639002 PPP1R3EQ9H7J1 279 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 BPIFA1Q9NP55 256 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 GPR108Q9NPR9 543 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 BEX4Q9NWD9 120 aaPredicted RBP4.02□□□□□ -1.77
CD44-239ENST00000639002 OR2W1Q9Y3N9 320 aa4.02□□□□□ -1.77
CD44-239ENST00000639002 CTAGE9A4FU28 777 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 GOLGA6L9A6NEM1 432 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 GAGE10A6NGK3 116 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 FTCDO95954 541 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 CTAGE8P0CG41 777 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 POU1F1P28069 291 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 PGM1P36871 562 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 USP8P40818 1118 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 NR0B1P51843 470 aaKnown RBP4.01□□□□□ -1.77
CD44-239ENST00000639002 HIST2H2ACQ16777 129 aaPredicted RBP4.01□□□□□ -1.77
CD44-239ENST00000639002 ARHGAP17Q68EM7 881 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 SLC22A25Q6T423 547 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 QSOX2Q6ZRP7 698 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 CTAGE4Q8IX94 777 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 KLHDC9Q8NEP7 349 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 RHBDF1Q96CC6 855 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 ZBTB10Q96DT7 871 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 PABPC5Q96DU9 382 aaKnown RBP4.01□□□□□ -1.77
CD44-239ENST00000639002 HINT3Q9NQE9 182 aaKnown RBP4.01□□□□□ -1.77
CD44-239ENST00000639002 HCN3Q9P1Z3 774 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 AMDHD2Q9Y303 409 aa4.01□□□□□ -1.77
CD44-239ENST00000639002 SMCHD1A6NHR9 2005 aa4□□□□□ -1.77
CD44-239ENST00000639002 DDX5P17844 614 aaKnown RBP4□□□□□ -1.77
CD44-239ENST00000639002 BDKRB2P30411 391 aa4□□□□□ -1.77
CD44-239ENST00000639002 PSMC2P35998 433 aaKnown RBP4□□□□□ -1.77
CD44-239ENST00000639002 HALP42357 657 aa4□□□□□ -1.77
CD44-239ENST00000639002 UFM1P61960 85 aa4□□□□□ -1.77
CD44-239ENST00000639002 OS9Q13438 667 aaPredicted RBP4□□□□□ -1.77
CD44-239ENST00000639002 PPP2R5BQ15173 497 aa4□□□□□ -1.77
CD44-239ENST00000639002 TMEM30BQ3MIR4 351 aa4□□□□□ -1.77
CD44-239ENST00000639002 KRTAP5-1Q6L8H4 278 aa4□□□□□ -1.77
CD44-239ENST00000639002 ZNF280DQ6N043 979 aa4□□□□□ -1.77
CD44-239ENST00000639002 KCTD18Q6PI47 426 aaPredicted RBP4□□□□□ -1.77
CD44-239ENST00000639002 LRRC8DQ7L1W4 858 aa4□□□□□ -1.77
CD44-239ENST00000639002 HAPLN4Q86UW8 402 aa4□□□□□ -1.77
CD44-239ENST00000639002 METTL27Q8N6F8 245 aaPredicted RBP4□□□□□ -1.77
CD44-239ENST00000639002 CTCFLQ8NI51 663 aaPredicted RBP4□□□□□ -1.77
CD44-239ENST00000639002 FAM76AQ8TAV0 307 aa4□□□□□ -1.77
CD44-239ENST00000639002 ZNF524Q96C55 264 aa4□□□□□ -1.77
CD44-239ENST00000639002 SLC41A2Q96JW4 573 aa4□□□□□ -1.77
CD44-239ENST00000639002 MTERF1Q99551 399 aaKnown RBP4□□□□□ -1.77
CD44-239ENST00000639002 LITAFQ99732 161 aa4□□□□□ -1.77
CD44-239ENST00000639002 SH3GL2Q99962 352 aa4□□□□□ -1.77
CD44-239ENST00000639002 FAM110AQ9BQ89 295 aa4□□□□□ -1.77
CD44-239ENST00000639002 LRRC1Q9BTT6 524 aa4□□□□□ -1.77
CD44-239ENST00000639002 EGLN1Q9GZT9 426 aa4□□□□□ -1.77
CD44-239ENST00000639002 NDST4Q9H3R1 872 aa4□□□□□ -1.77
CD44-239ENST00000639002 HCFC1R1Q9NWW0 138 aa4□□□□□ -1.77
CD44-239ENST00000639002 CNOT7Q9UIV1 285 aaKnown RBP4□□□□□ -1.77
CD44-239ENST00000639002 SEC14L5O43304 696 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 PAX1P15863 534 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 SORDQ00796 357 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 PDE1BQ01064 536 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 SREBF2Q12772 1141 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 PPFIA1Q13136 1202 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 GTF2H2Q13888 395 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 GTF2H2CQ6P1K8 395 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 METTL2BQ6P1Q9 378 aaKnown RBP3.99□□□□□ -1.77
CD44-239ENST00000639002 KCTD8Q6ZWB6 473 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 HMGCLL1Q8TB92 370 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 TAS1R2Q8TE23 839 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 METTL2AQ96IZ6 378 aaKnown RBP3.99□□□□□ -1.77
CD44-239ENST00000639002 F2RL3Q96RI0 385 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 SYT17Q9BSW7 474 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 FUZQ9BT04 418 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 RBM4Q9BWF3 364 aaKnown RBP3.99□□□□□ -1.77
CD44-239ENST00000639002 TTC7AQ9ULT0 858 aaPredicted RBP3.99□□□□□ -1.77
CD44-239ENST00000639002 PADI3Q9ULW8 664 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 A4GNTQ9UNA3 340 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 DLGAP4Q9Y2H0 992 aa3.99□□□□□ -1.77
CD44-239ENST00000639002 PMS2P5A8MQ11 134 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms