RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FAM155AB1AL88 458 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 PRAMEF11O60813 436 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 TRPA1O75762 1119 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 BMP2P12643 396 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 TSPAN8P19075 237 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MAPKAPK2P49137 400 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 NR1H2P55055 460 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 EFEMP1Q12805 493 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MAP7Q14244 749 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 OR4D1Q15615 310 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 TRIM71Q2Q1W2 868 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 TYSND1Q2T9J0 566 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 ALG1LQ6GMV1 187 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 HMBOX1Q6NT76 420 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 IYDQ6PHW0 289 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 RAB44Q7Z6P3 723 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 DHFR2Q86XF0 187 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 SNX31Q8N9S9 440 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 GOLM1Q8NBJ4 401 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 OR2T34Q8NGX1 318 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 OR2T3Q8NH03 318 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 ATOH8Q96SQ7 321 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 PRPF18Q99633 342 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 SEMA3CQ99985 751 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 AARSD1Q9BTE6 412 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 OLA1Q9NTK5 396 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MAP10Q9P2G4 905 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 TDRD15B5MCY1 1934 aaKnown RBP12.75□□□□□ -0.37
LINC00540-203ENST00000631321 ATP6AP2A0A1C7CYW4 349 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 AZIN1O14977 448 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 ATP6AP2O75787 350 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 MATN4O95460 622 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 CACNB2Q08289 660 aaPredicted RBP12.75□□□□□ -0.37
LINC00540-203ENST00000631321 SEMA3AQ14563 771 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 MYLK3Q32MK0 819 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 SPATS1Q496A3 300 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 RAP1GAP2Q684P5 730 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 KLHDC10Q6PID8 442 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF280BQ86YH2 543 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 MINDY1Q8N5J2 469 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 SEMA6AQ9H2E6 1030 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 DMTF1Q9Y222 760 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 PCDHB5Q9Y5E4 795 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 ARL5AQ9Y689 179 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 SQORQ9Y6N5 450 aa12.75□□□□□ -0.37
LINC00540-203ENST00000631321 A0A0J9YYE9 177 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 H3BMM5 538 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MUSKO15146 869 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ADAMTS4O75173 837 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MT-CO1P00395 513 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 SLC4A1P02730 911 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 HSD17B1P14061 328 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 GRK4P32298 578 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ETFBP38117 255 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MRPL19P49406 292 aaKnown RBP12.74□□□□□ -0.37
LINC00540-203ENST00000631321 STC1P52823 247 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CDH13P55290 713 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MTX3Q5HYI7 312 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 COQ5Q5HYK3 327 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 FAM219BQ5XKK7 198 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 B3GNT6Q6ZMB0 384 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 RASAL3Q86YV0 1011 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 TWIST2Q8WVJ9 160 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 NMD3Q96D46 503 aaKnown RBP12.74□□□□□ -0.37
LINC00540-203ENST00000631321 DTNBP1Q96EV8 351 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF599Q96NL3 588 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 GRIP2Q9C0E4 1043 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 PDFQ9HBH1 243 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 SDR39U1Q9NRG7 319 aaPredicted RBP12.74□□□□□ -0.37
LINC00540-203ENST00000631321 INTS10Q9NVR2 710 aaKnown RBP12.74□□□□□ -0.37
LINC00540-203ENST00000631321 SNX13Q9Y5W8 968 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MYO16Q9Y6X6 1858 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 DOCK4Q8N1I0 1966 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 AQP12BA6NM10 295 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 UBXN8O00124 270 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 PIP5K1BO14986 540 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 KERAO60938 352 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CSPG5O95196 566 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 TBX18O95935 607 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ATP6V1B2P21281 511 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 PSMA3P25788 255 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CTGFP29279 349 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ATP6V0D1P61421 351 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 RING1Q06587 406 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 NRF1Q16656 503 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 EML3Q32P44 896 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 PPP4R4Q6NUP7 873 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 GLB1LQ6UWU2 654 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 LAYNQ6UX15 382 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 CYP2R1Q6VVX0 501 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ERMP1Q7Z2K6 904 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF354CQ86Y25 554 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 AQP12AQ8IXF9 295 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 COLGALT2Q8IYK4 626 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 MIER2Q8N344 545 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 OR4L1Q8NH43 312 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 ZFP28Q8NHY6 868 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 KIAA1191Q96A73 305 aa12.74□□□□□ -0.37
LINC00540-203ENST00000631321 TRIB3Q96RU7 358 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms