RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	AGO1	Q9UL18	857 aa	Known RBP	13.91	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.91	□□□□□ -0.18
COPS7B-223	ENST00000611614		A0A087X1B8	175 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	DLX3	O60479	287 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CLDN11	O75508	207 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RFPL2	O75678	378 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	OLFM2	O95897	454 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	KLKB1	P03952	638 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	HOXA9	P31269	272 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RENBP	P51606	427 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	NAGLU	P54802	743 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CDH4	P55283	916 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CAMK1	Q14012	370 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZNF460	Q14592	562 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RAB30	Q15771	203 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	PCSK7	Q16549	785 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	LRRC23	Q53EV4	343 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	SEL1L3	Q68CR1	1132 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZNF470	Q6ECI4	717 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	NEPRO	Q6NW34	567 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CIR1	Q86X95	450 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	LEMD2	Q8NC56	503 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CATSPER1	Q8NEC5	780 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	STON2	Q8WXE9	905 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	NXNL1	Q96CM4	212 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	IMP4	Q96G21	291 aa	Known RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	SLC22A12	Q96S37	553 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	SHCBP1L	Q9BZQ2	653 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	CERS4	Q9HA82	394 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ATP13A1	Q9HD20	1204 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	PLK2	Q9NYY3	685 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	XPR1	Q9UBH6	696 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	VTI1B	Q9UEU0	232 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	BCAP29	Q9UHQ4	241 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	FBXO5	Q9UKT4	447 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	TMCO1	Q9UM00	188 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	PRPF19	Q9UMS4	504 aa	Known RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	LOC100653049	A0A140TA62	436 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	HEATR9	A2RTY3	570 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	SLCO1B7	G3V0H7	640 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	KRT34	O76011	436 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	EPCAM	P16422	314 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	SLC6A4	P31645	630 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	AQP4	P55087	323 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	MTTP	P55157	894 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	POU4F1	Q01851	419 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	DLG1	Q12959	904 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZNF177	Q13360	481 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	TRIP10	Q15642	601 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	PPP2R2D	Q66LE6	453 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RNF111	Q6ZNA4	994 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	KIAA0408	Q6ZU52	694 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	FRMD7	Q6ZUT3	714 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RBM23	Q86U06	439 aa	Known RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	KBTBD6	Q86V97	674 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	MARVELD2	Q8N4S9	558 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RNF217	Q8TC41	542 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	EZH1	Q92800	747 aa	Predicted RBP	13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	MOCOS	Q96EN8	888 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	HMCES	Q96FZ2	354 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	RANBP9	Q96S59	729 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	LRRC3	Q9BY71	257 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	NT5M	Q9NPB1	228 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ATXN10	Q9UBB4	475 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	ZNF510	Q9Y2H8	683 aa		13.9	□□□□□ -0.18
COPS7B-223	ENST00000611614	MYLK	Q15746	1914 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	PER2	O15055	1255 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	GRID2	O43424	1007 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	DENR	O43583	198 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	TFEB	P19484	476 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	DDX6	P26196	483 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	PEX2	P28328	305 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	CCR10	P46092	362 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	KPNA2	P52292	529 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	TAS2R39	P59534	338 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	TBL3	Q12788	808 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	C5orf22	Q49AR2	442 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	LPCAT4	Q643R3	524 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	UGT2A3	Q6UWM9	527 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	DEFB107A	Q8IZN7	70 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	LSMEM2	Q8N112	164 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	B4GALNT2	Q8NHY0	566 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	SERPINI1	Q99574	410 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	MRPL57	Q9BQC6	102 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	MRPL46	Q9H2W6	279 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	SLC28A3	Q9HAS3	691 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	ACSS2	Q9NR19	701 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	VPS45	Q9NRW7	570 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	ZDHHC2	Q9UIJ5	367 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	PSMD13	Q9UNM6	376 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	YBX2	Q9Y2T7	364 aa	Known RBP	13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	DTNA	Q9Y4J8	743 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	GOLGA8Q	A0A0J9YX86	632 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614		A0A1B0GVM2	712 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	GOLGA8O	A6NCC3	632 aa		13.89	□□□□□ -0.19
COPS7B-223	ENST00000611614	TCAF2	A6NFQ2	919 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms