RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 GLTPD2A6NH11 291 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 PIP5K1BO14986 540 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 ACADSBP45954 432 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 RPS9P46781 194 aaKnown RBP18.35■□□□□ 0.53
UPF1-210ENST00000600689 UGP2Q16851 508 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 PYCR3Q53H96 274 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 PCID2Q5JVF3 399 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 B3GALNT2Q8NCR0 500 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 GLT1D1Q96MS3 346 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 AGPAT4Q9NRZ5 378 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 SMPD3Q9NY59 655 aaPredicted RBP18.35■□□□□ 0.53
UPF1-210ENST00000600689 NDUFAF1Q9Y375 327 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 SYNCRIPO60506 623 aaKnown RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 IST1P53990 364 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 PRKAA2P54646 552 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 RAD23AP54725 363 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 MAXP61244 160 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 NFYCQ13952 458 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 DUSP28Q4G0W2 176 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 TMEM53Q6P2H8 277 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 TTC39CQ8N584 583 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 CENPNQ96H22 339 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 MCMBPQ9BTE3 642 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 BEGAINQ9BUH8 593 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 WDCPQ9H6R7 721 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 DOCK3Q8IZD9 2030 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 PTGES3LE9PB15 166 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 DYNC1LI2O43237 492 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 HGFP14210 728 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 PDCD4Q53EL6 469 aaKnown RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 TECRLQ5HYJ1 363 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 IGFN1Q86VF2 1251 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 ZNF354CQ86Y25 554 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 ADGRG5Q8IZF4 528 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 CLEC4FQ8N1N0 589 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 TRPC4APQ8TEL6 797 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 TAMM41Q96BW9 452 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 TINF2Q9BSI4 451 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 C1orf50Q9BV19 199 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 KIFC1Q9BW19 673 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 RCOR3Q9P2K3 495 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 TSR3Q9UJK0 312 aaKnown RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 NCF1BA6NI72 391 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 NCF1CA8MVU1 366 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 DAB1O75553 588 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 FYNP06241 537 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 NCF1P14598 390 aaPredicted RBP18.34■□□□□ 0.53
UPF1-210ENST00000600689 HOXD12P35452 270 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 CAPGP40121 348 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 HK2P52789 917 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 ANKRD34AQ69YU3 496 aa18.34■□□□□ 0.53
UPF1-210ENST00000600689 FAM155AB1AL88 458 aaPredicted RBP18.33■□□□□ 0.53
UPF1-210ENST00000600689 MOCS2O96007 188 aaPredicted RBP18.33■□□□□ 0.53
UPF1-210ENST00000600689 ALBP02768 609 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 SH3BP2P78314 561 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 DNASE1L3Q13609 305 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 SPIDRQ14159 915 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 PTPRCAPQ14761 206 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 PFKFB4Q16877 469 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 CYBRD1Q53TN4 286 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 AGAP9Q5VTM2 703 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 WSCD1Q658N2 575 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 SLC7A5P1Q8MH63 180 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 SNX19Q92543 992 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 ESAMQ96AP7 390 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 HSFY1Q96LI6 401 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 UHRF1Q96T88 793 aaPredicted RBP18.33■□□□□ 0.53
UPF1-210ENST00000600689 LHPPQ9H008 270 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 POLE4Q9NR33 117 aa18.33■□□□□ 0.53
UPF1-210ENST00000600689 A0A1B0GTL3 188 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 GPX3P22352 226 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 SHMT2P34897 504 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 HADHAP40939 763 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 CCT8P50990 548 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 SOX4Q06945 474 aaPredicted RBP18.33■□□□□ 0.52
UPF1-210ENST00000600689 PGS1Q32NB8 556 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 ITIH5Q86UX2 942 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 TOP1MTQ969P6 601 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 HBEGFQ99075 208 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 HERC2P3Q9BVR0 1158 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 ADAMTS10Q9H324 1103 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 ARMC1Q9NVT9 282 aa18.33■□□□□ 0.52
UPF1-210ENST00000600689 ACOX3O15254 700 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 CRCPO75575 148 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 SLC6A2P23975 617 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 DCKP27707 260 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 BTG3Q14201 252 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 POLD3Q15054 466 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 STK32CQ86UX6 486 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 KCTD14Q9BQ13 255 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 GSTO2Q9H4Y5 243 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 DNAJC15Q9Y5T4 150 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 COL1A2P08123 1366 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 LTA4HP09960 611 aaKnown RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 OPRL1P41146 370 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 ARCN1P48444 511 aaKnown RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 GSK3BP49841 420 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 FPGSQ05932 587 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 GRB14Q14449 540 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 ATP6AP1Q15904 470 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms