RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NAPRTQ6XQN6 538 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 TMEM25Q86YD3 366 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 STK40Q8N2I9 435 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PCDH20Q8N6Y1 951 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 LPGAT1Q92604 370 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 BBS2Q9BXC9 721 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 GPR63Q9BZJ6 419 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CDH19Q9H159 772 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SPHK2Q9NRA0 654 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 POLR3BQ9NW08 1133 aaPredicted RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 TAS2R13Q9NYV9 303 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 MARK1Q9P0L2 795 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 IL17CQ9P0M4 197 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 VTI1BQ9UEU0 232 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 EVLQ9UI08 416 aaPredicted RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 CLEC4EQ9ULY5 219 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CCDC189A1A4V9 331 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 GOLGA8CPA6NN73 597 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PYGLP06737 847 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SRCP12931 536 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 HLA-FP30511 346 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 MC4RP32245 332 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 ADARP55265 1226 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 CACNG1Q06432 222 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 RAD51Q06609 339 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PDAP1Q13442 181 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 SLC5A9Q2M3M2 681 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 ZNF549Q6P9A3 640 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CERS6Q6ZMG9 384 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CAMK1DQ8IU85 385 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PLPP6Q8IY26 295 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PAF1Q8N7H5 531 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 NSL1Q96IY1 281 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CNDP1Q96KN2 507 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 TTC1Q99614 292 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CPEB1Q9BZB8 566 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 FKBPLQ9UIM3 349 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 NUP210Q8TEM1 1887 aaPredicted RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 A0A0J9YYE9 177 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 UBA6A0AVT1 1052 aaPredicted RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 NEDD8-MDP1E9PL57 170 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 SRP72O76094 671 aaKnown RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 TRBC1P01850 177 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 T-ENOLP0DO92 83 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 PABPC1P11940 636 aaKnown RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 CALB2P22676 271 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 TARSP26639 723 aaKnown RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 PTPN4P29074 926 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 NAGLUP54802 743 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 PTPN5P54829 565 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 ERVK-21P61565 698 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 GPM6BQ13491 265 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 TTC31Q49AM3 519 aaPredicted RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 HSF5Q4G112 596 aaPredicted RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 DGKKQ5KSL6 1271 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 C22orf39Q6P5X5 142 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 GRASPQ7Z6J2 395 aaPredicted RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 RHEBL1Q8TAI7 183 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 PNPOQ9NVS9 261 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 MRPS23Q9Y3D9 190 aaKnown RBP14.16□□□□□ -0.14
LIG3-205ENST00000585941 SLC30A1Q9Y6M5 507 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 MYOFQ9NZM1 2061 aa14.16□□□□□ -0.14
LIG3-205ENST00000585941 ZNF106Q9H2Y7 1883 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 CAPN8A6NHC0 703 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZNF821O75541 412 aaPredicted RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 IPO13O94829 963 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 RHOBTB1O94844 696 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 PAPLNO95428 1278 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 PRAMEF12O95522 483 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 POP4O95707 220 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 SLC4A1P02730 911 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 TYRP14679 529 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZNF37AP17032 561 aaPredicted RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 ARRB2P32121 409 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 PTGER3P43115 390 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 RPL14P50914 215 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 PGGT1BP53609 377 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ATP6V0D1P61421 351 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ECT2LQ008S8 904 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 MYLK3Q32MK0 819 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 FUT11Q495W5 492 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZRANB3Q5FWF4 1079 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 LYPLAL1Q5VWZ2 237 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 METTL21CQ5VZV1 264 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 RYBPQ8N488 228 aaPredicted RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 CELF5Q8N6W0 485 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZNF707Q96C28 371 aaPredicted RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZNF641Q96N77 438 aaPredicted RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 LYSMD1Q96S90 227 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 TRMOQ9BU70 441 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 NMUR2Q9GZQ4 415 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 POMKQ9H5K3 350 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 PIDD1Q9HB75 910 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZFYVE1Q9HBF4 777 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 EML4Q9HC35 981 aaKnown RBP14.15□□□□□ -0.14
LIG3-205ENST00000585941 APPL1Q9UKG1 709 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 HCFC2Q9Y5Z7 792 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 MYO7AQ13402 2215 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 BPTFQ12830 3046 aa14.15□□□□□ -0.14
LIG3-205ENST00000585941 ZNF195O14628 629 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms