RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OR1F2PQ96R84 312 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 KXD1Q9BQD3 176 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 STRA6Q9BX79 667 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 RANBP17Q9H2T7 1088 aaKnown RBP5.27□□□□□ -1.57
NUP88-213ENST00000576862 NDST4Q9H3R1 872 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 KIF9Q9HAQ2 790 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 ERVK-11Q9UQG0 969 aa5.27□□□□□ -1.57
NUP88-213ENST00000576862 A0A1W2PQF6 199 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 MAGEA13PA6NCF6 341 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 B4E171 279 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 ZNF587BE7ETH6 402 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 PAGE4O60829 102 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 RFPL2O75678 378 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 TBX18O95935 607 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 CD4P01730 458 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 DDX5P17844 614 aaKnown RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 KRT9P35527 623 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 TSPAN7P41732 249 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 ERVFC1-1P60608 527 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 TBCEQ15813 527 aaPredicted RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 USP41Q3LFD5 358 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 METTL2BQ6P1Q9 378 aaKnown RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 SLC36A4Q6YBV0 504 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 PQLC2Q6ZP29 291 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 SATL1Q86VE3 508 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 DSELQ8IZU8 1212 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 OR2AK2Q8NG84 335 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 INTS12Q96CB8 462 aaKnown RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 IGSF21Q96ID5 467 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 METTL2AQ96IZ6 378 aaKnown RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 ZNF385AQ96PM9 386 aaKnown RBP5.26□□□□□ -1.57
NUP88-213ENST00000576862 ZNF224Q9NZL3 707 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 SIX4Q9UIU6 781 aa5.26□□□□□ -1.57
NUP88-213ENST00000576862 FAM237AA0A1B0GTK4 181 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 TMEM63AO94886 807 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 CLEC3BP05452 202 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 SNRNP70P08621 437 aaKnown RBP5.25□□□□□ -1.57
NUP88-213ENST00000576862 IL7RP16871 459 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 GAS1P54826 345 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 SEC61BP60468 96 aaKnown RBP5.25□□□□□ -1.57
NUP88-213ENST00000576862 OLR1P78380 273 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 POU5F1BQ06416 359 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 OLIG2Q13516 323 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 GGNBP1Q5YKI7 109 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 TSSK4Q6SA08 328 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 CCDC13Q8IYE1 715 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 ZNF441Q8N8Z8 693 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 MMABQ96EY8 250 aaPredicted RBP5.25□□□□□ -1.57
NUP88-213ENST00000576862 PKNOX2Q96KN3 472 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 PKP4Q99569 1192 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 SH3GL2Q99962 352 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 IFIH1Q9BYX4 1025 aaKnown RBP5.25□□□□□ -1.57
NUP88-213ENST00000576862 UNC45AQ9H3U1 944 aa5.25□□□□□ -1.57
NUP88-213ENST00000576862 SAA2-SAA4A0A096LPE2 208 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 PRR23D1E9PI22 279 aaPredicted RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 TULP2O00295 520 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 DDNO94850 711 aaPredicted RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 PRR23D2P0DMB1 279 aaPredicted RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 PBX3P40426 434 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 RARSP54136 660 aaKnown RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 HNRNPH2P55795 449 aaKnown RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 KRTAP10-9P60411 292 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 IRX6P78412 446 aaPredicted RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 RPL36AP83881 106 aaKnown RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 CEBPZQ03701 1054 aaKnown RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 TNFAIP1Q13829 316 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 CCNG2Q16589 344 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 CTF1Q16619 201 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 KRT24Q2M2I5 525 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 TMEM116Q8NCL8 245 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 SORCS1Q8WY21 1168 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 C7orf26Q96N11 449 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 IL17FQ96PD4 163 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 MAP7D2Q96T17 732 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 TMEM47Q9BQJ4 181 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 PDCL3Q9H2J4 239 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 PCDH9Q9HC56 1237 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 KCNS2Q9ULS6 477 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 TTC7AQ9ULT0 858 aaPredicted RBP5.24□□□□□ -1.57
NUP88-213ENST00000576862 TNIKQ9UKE5 1360 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 FGD5Q6ZNL6 1462 aa5.24□□□□□ -1.57
NUP88-213ENST00000576862 KIF27Q86VH2 1401 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 BIVM-ERCC5R4GMW8 1640 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 A0A1W2PRG0 241 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 DENND3A2RUS2 1198 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 IFITM10A6NMD0 228 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 HNRNPCL2B2RXH8 293 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 EIF3CLB5ME19 914 aaKnown RBP5.23□□□□□ -1.57
NUP88-213ENST00000576862 VCYO14598 125 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 SPARCP09486 303 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 PAX3P23760 479 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 BSGP35613 385 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 FRG1Q14331 258 aaKnown RBP5.23□□□□□ -1.57
NUP88-213ENST00000576862 CYP20A1Q6UW02 462 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 CCNI2Q6ZMN8 369 aaPredicted RBP5.23□□□□□ -1.57
NUP88-213ENST00000576862 TDRD7Q8NHU6 1098 aaKnown RBP5.23□□□□□ -1.57
NUP88-213ENST00000576862 SPATA20Q8TB22 786 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 ETNPPLQ8TBG4 499 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 NEK9Q8TD19 979 aa5.23□□□□□ -1.57
NUP88-213ENST00000576862 IGSF8Q969P0 613 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms