RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MFSD4BQ5TF39 518 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 CLEC6AQ6EIG7 209 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ZFP1Q6P2D0 407 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PRSS55Q6UWB4 352 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 LARP4Q71RC2 724 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS53-220ENST00000576149 CRIPAKQ8N1N5 446 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 RHEBL1Q8TAI7 183 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 NSMCE3Q96MG7 304 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 TMEM175Q9BSA9 504 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PPP1R12CQ9BZL4 782 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 TRPC7Q9HCX4 862 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 INTS10Q9NVR2 710 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 NLE1Q9NVX2 485 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 UBA2Q9UBT2 640 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 HTTP42858 3142 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ACOT8O14734 319 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ADAM12O43184 909 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 KDELR3O43731 214 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 RNASEH1O60930 286 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 GPC4O75487 556 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 GJB5O95377 273 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 CRTAMO95727 393 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 TSPAN8P19075 237 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PMLP29590 882 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 RGRP47804 291 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ALDH1A3P47895 512 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ZNF140P52738 457 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 RPL26P61254 145 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 PSME3P61289 254 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 RPS24P62847 133 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 LRP8Q14114 963 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 FASTKQ14296 549 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 OR4D1Q15615 310 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 UGT3A2Q3SY77 523 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 NPAS4Q8IUM7 802 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 CLYBLQ8N0X4 340 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 RNF148Q8N7C7 305 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 FBXO22Q8NEZ5 403 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 BHLHE22Q8NFJ8 381 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 RAET1EQ8TD07 263 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PXYLP1Q8TE99 480 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 BCL7CQ8WUZ0 217 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 DLG3Q92796 817 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 CEP295NLQ96MC4 621 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 ASB2Q96Q27 587 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 SPON2Q9BUD6 331 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 CINPQ9BW66 212 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 TFB2MQ9H5Q4 396 aaKnown RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 PDP2Q9P2J9 529 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 SARDHQ9UL12 918 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PHF24Q9UPV7 400 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PCDHGA7Q9Y5G6 932 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 SPO11Q9Y5K1 396 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 H3BMM5 538 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 TRIM38O00635 465 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 FBP2O00757 339 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 FGF4P08620 206 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 PRSS56P0CW18 603 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 NAT2P11245 290 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 MTHFD2P13995 350 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 VCLP18206 1134 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CR2P20023 1033 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 PSMA3P25788 255 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CDH13P55290 713 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 OXCT1P55809 520 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 MRPS22P82650 360 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 PDAP1Q13442 181 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 MED21Q13503 144 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 BFSP2Q13515 415 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 TCTN1Q2MV58 587 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 AGKQ53H12 422 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SLC8B1Q6J4K2 584 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 KLHDC10Q6PID8 442 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 TMEM126BQ8IUX1 230 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 DENND1CQ8IV53 801 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 RYBPQ8N488 228 aaPredicted RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 PTGR2Q8N8N7 351 aaPredicted RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 PDZD8Q8NEN9 1154 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CD99L2Q8TCZ2 262 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SEPT8Q92599 483 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 PRICKLE1Q96MT3 831 aaPredicted RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 BTBD9Q96Q07 612 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 ATOH8Q96SQ7 321 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 MRPL9Q9BYD2 267 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 NACA2Q9H009 215 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CACNA2D2Q9NY47 1150 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 ASB3Q9Y575 518 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CHD5Q8TDI0 1954 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 ZNF840PA6NDX5 716 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 UBXN8O00124 270 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 INSIG1O15503 277 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 HOXA2O43364 376 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 AOC2O75106 756 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CLDN11O75508 207 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 CDK14O94921 469 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 PRLP01236 227 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SNRPB2P08579 225 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 ATP4BP51164 291 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SCNN1BP51168 640 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SH3BP2P78314 561 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms