RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 PATE1Q8WXA2 126 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 ARHGEF2Q92974 986 aaKnown RBP9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 GDAP1L1Q96MZ0 367 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 NT5C1BQ96P26 610 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 GPR87Q9BY21 358 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 ZYG11BQ9C0D3 744 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 TTYH3Q9C0H2 523 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 ARHGEF38Q9NXL2 777 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 ARMCX3Q9UH62 379 aaPredicted RBP9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 CTNND2Q9UQB3 1225 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 ACTL7AQ9Y615 435 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 COPG1Q9Y678 874 aaKnown RBP9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 SPG11Q96JI7 2443 aa9.04□□□□□ -0.96
VPS9D1-205ENST00000565452 SHANK1Q9Y566 2161 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 MED13LQ71F56 2210 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 TRIM49BA6NDI0 452 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 ARGFXA6NJG6 315 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PMM2O15305 246 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 TEX33O43247 280 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 GRAP2O75791 330 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 ZNF28P17035 718 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 AK4P27144 223 aaPredicted RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 NDST2P52849 883 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PMS1P54277 932 aaKnown RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 SNX16P57768 344 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 CTBSQ01459 385 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 GRM3Q14832 879 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 TESK1Q15569 626 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PLEKHN1Q494U1 663 aaPredicted RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 DCAF17Q5H9S7 520 aaPredicted RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 CFAP58Q5T655 872 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 SMYD5Q6GMV2 418 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PNCKQ6P2M8 343 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 XYLT1Q86Y38 959 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 DRC7Q8IY82 874 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PPM1KQ8N3J5 372 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 RBMXL3Q8N7X1 1067 aaKnown RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 SH3KBP1Q96B97 665 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 RANBP9Q96S59 729 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 LGR4Q9BXB1 951 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 RETREG1Q9H6L5 497 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 WDR26Q9H7D7 661 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 SUDS3Q9H7L9 328 aaPredicted RBP9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 PCDH12Q9NPG4 1184 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 COPG2Q9UBF2 871 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 SNX10Q9Y5X0 201 aa9.03□□□□□ -0.96
VPS9D1-205ENST00000565452 TRBV23OR9-2A0A075B6M9 112 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 SYCE3A1L190 88 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 P4HA2O15460 535 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 BUB1O43683 1085 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CEACAM4O75871 244 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 RECQL5O94762 991 aaPredicted RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 KIAA0754O94854 1291 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 NDUFA10O95299 355 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 IGSF6O95976 241 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CAPN3P20807 821 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CLCN1P35523 988 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 ACVRL1P37023 503 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 GNPDA1P46926 289 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 FASLGP48023 281 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 HDAC4P56524 1084 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 STX17P56962 302 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 RPS15P62841 145 aaKnown RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CETN1Q12798 172 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CHAF1BQ13112 559 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 ART3Q13508 389 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CCDC40Q4G0X9 1142 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 C11orf57Q6ZUT1 292 aaPredicted RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 PLXDC1Q8IUK5 500 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 ANKRD20A12PQ8NF67 263 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CASKIN2Q8WXE0 1202 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 VOPP1Q96AW1 172 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 NCAPGQ9BPX3 1015 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 MAGEH1Q9H213 219 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 ACTL8Q9H568 366 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 SUV39H2Q9H5I1 410 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 CHST11Q9NPF2 352 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 LHX9Q9NQ69 397 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 PHPT1Q9NRX4 125 aaPredicted RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 AGPAT4Q9NRZ5 378 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 PIGVQ9NUD9 493 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 PPARGC1AQ9UBK2 798 aaKnown RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 KLHL3Q9UH77 587 aa9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 NYNRINQ9P2P1 1898 aaKnown RBP9.02□□□□□ -0.97
VPS9D1-205ENST00000565452 SSU72P8A0A1W2PR75 194 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 LRRC10BA6NIK2 292 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 BECN2A8MW95 431 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 THAP12O43422 761 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 KDELR3O43731 214 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 BUB1BO60566 1050 aaPredicted RBP9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 ZG16O60844 167 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 CEACAM5P06731 702 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 TPM2P07951 284 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 MYCLP1P12525 358 aaPredicted RBP9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 COX6B1P14854 86 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 HOXB4P17483 251 aaPredicted RBP9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 LPOP22079 712 aaPredicted RBP9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 EEF1GP26641 437 aaKnown RBP9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 PTPN4P29074 926 aa9.01□□□□□ -0.97
VPS9D1-205ENST00000565452 ADCY8P40145 1251 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms