RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RNF135Q8IUD6 432 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 CILP2Q8IUL8 1156 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 DHRSXQ8N5I4 330 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 OR6J1Q8NGC5 347 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 OR9I1Q8NGQ6 314 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 PHF21BQ96EK2 531 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 THAP11Q96EK4 314 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 UNKQ9C0B0 810 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 MFSD1Q9H3U5 465 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 SDR39U1Q9NRG7 319 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 INTS10Q9NVR2 710 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 SMPD3Q9NY59 655 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 EBF1Q9UH73 591 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 H0YAE9 185 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 NR5A2O00482 541 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 GIPC1O14908 333 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 PMPCBO75439 489 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 HLA-DQB2P05538 268 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 ALDOCP09972 364 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 GFAPP14136 432 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 LBPP18428 481 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 NELFEP18615 380 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 CD97P48960 835 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 WNT3AP56704 352 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 NRG1Q02297 640 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 EIF4EBP2Q13542 120 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 DUS1LQ6P1R4 473 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 KDELC1Q6UW63 502 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 LYSMD3Q7Z3D4 306 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 ISCA2Q86U28 154 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 PDPRQ8NCN5 879 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 DQX1Q8TE96 717 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 EDEM1Q92611 657 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 CCDC68Q9H2F9 335 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 RNF39Q9H2S5 420 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 RPF2Q9H7B2 306 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 RNF19AQ9NV58 838 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 OSER1Q9NX31 292 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 STT3AP46977 705 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 CRHR2Q13324 411 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 FSCN1Q16658 493 aaKnown RBP16.28■□□□□ 0.2
SHMT2-232ENST00000557487 KANK2Q63ZY3 851 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 IQSEC1Q6DN90 963 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 OGFOD2Q6N063 350 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 ARHGAP36Q6ZRI8 547 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 EFL1Q7Z2Z2 1120 aaKnown RBP16.28■□□□□ 0.2
SHMT2-232ENST00000557487 SPATA19Q7Z5L4 167 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 SPPL2CQ8IUH8 684 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 RHEBL1Q8TAI7 183 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 OSCP1Q8WVF1 389 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 PEX13Q92968 403 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 LRRC58Q96CX6 371 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 COX4I2Q96KJ9 171 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 SLC39A8Q9C0K1 460 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 ZFYVE28Q9HCC9 887 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 FADS3Q9Y5Q0 445 aa16.28■□□□□ 0.2
SHMT2-232ENST00000557487 WASH4PA8MWX3 477 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 FXYD1O00168 92 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 PDHXO00330 501 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 AZIN1O14977 448 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 ARPC2O15144 300 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 ACOX3O15254 700 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 IRAK2O43187 625 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 SMIM10L2AP0DMW4 78 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 SMIM10L2BP0DMW5 78 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 SLC6A2P23975 617 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 RFC2P35250 354 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 HLCSP50747 726 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 PLK1P53350 603 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 EEFSECP57772 596 aaKnown RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 TAF1CQ15572 869 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 CCNYL2Q5T2Q4 361 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 CLEC6AQ6EIG7 209 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 CMTR2Q8IYT2 770 aaKnown RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 DCP1BQ8IZD4 617 aaKnown RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 SMG8Q8ND04 991 aaKnown RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 GPRC5AQ8NFJ5 357 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 HDAC10Q969S8 669 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 TSPYL2Q9H2G4 693 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-232ENST00000557487 ALG9Q9H6U8 611 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 PFDN4Q9NQP4 134 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 CMTM6Q9NX76 183 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 ZNF639Q9UID6 485 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 PCDHA9Q9Y5H5 950 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 DNAJC15Q9Y5T4 150 aa16.27■□□□□ 0.2
SHMT2-232ENST00000557487 MYBPHLA2RUH7 354 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 H3BMQ9 156 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 PTGESO14684 152 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 AURKAO14965 403 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 NPPAP01160 153 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 JUNBP17275 347 aaPredicted RBP16.27■□□□□ 0.19
SHMT2-232ENST00000557487 SMPD1P17405 629 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 TMBIM6P55061 237 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 TNK2Q07912 1038 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 TUBA3CQ13748 450 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 RPS6KA2Q15349 733 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 MOGQ16653 247 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 ELMSAN1Q6PJG2 1045 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 BLOC1S3Q6QNY0 202 aa16.27■□□□□ 0.19
SHMT2-232ENST00000557487 PRR23BQ6ZRT6 265 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms