RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DNPEPQ9ULA0 475 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 CSNK1G3Q9Y6M4 447 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 C1orf232A0A0U1RR37 186 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6CA6NDK9 693 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6BA6NDN3 693 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 NEMP2A6NFY4 417 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TMEM202A6NGA9 273 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 ANKRD66B4E2M5 251 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 PMPCBO75439 489 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 GCATO75600 419 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TJP3O95049 919 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 RASGRP1O95267 797 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CLDN7O95471 211 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CELA2BP08218 269 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CCDC175P0C221 793 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6DP0CG33 693 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 ALPPL2P10696 532 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 MYCLP1P12525 358 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 RBL1P28749 1068 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 HK3P52790 923 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 EIF3EP60228 445 aaKnown RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 SRP54P61011 504 aaKnown RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 PTSQ03393 145 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CDK18Q07002 472 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 C1orf61Q13536 156 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TCEA2Q15560 299 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CDKN3Q16667 212 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 DEFB133Q30KQ1 61 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 HS1BP3Q53T59 392 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 RAET1GQ6H3X3 334 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 HEATR4Q86WZ0 1026 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 CDKL3Q8IVW4 592 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 OR56A4Q8NGH8 313 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 ATL2Q8NHH9 583 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 OR1E3Q8WZA6 343 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TSACCQ96A04 125 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 OXNAD1Q96HP4 312 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TBATAQ96M53 351 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 VAT1Q99536 393 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 MLPHQ9BV36 600 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 TEX101Q9BY14 249 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 KCTD5Q9NXV2 234 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6AQ9NYA3 693 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 SPASTQ9UBP0 616 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 PCDHGA1Q9Y5H4 931 aa13.7□□□□□ -0.22
SHMT2-219ENST00000555563 ARID1BQ8NFD5 2236 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-219ENST00000555563 LY6G6EA0A0G2JKS1 128 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 GOLGA6L3A6NEY3 463 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 RFPL3O75679 317 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 NDST3O95803 873 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 SOD1P00441 154 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 HOXC4P09017 264 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-219ENST00000555563 PIRTP0C851 137 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 RBP3P10745 1247 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 MYF5P13349 255 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 CKMT2P17540 419 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 BLKP51451 505 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 DAB2P98082 770 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 CDK3Q00526 305 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 DPTQ07507 201 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 KDELC1Q6UW63 502 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 DHRS13Q6UX07 377 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 PID1Q7Z2X4 250 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 LYSMD3Q7Z3D4 306 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 RD3Q7Z3Z2 195 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 SCAMP4Q969E2 229 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 AP2M1Q96CW1 435 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 APOLD1Q96LR9 279 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 FCRL5Q96RD9 977 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 DUSP23Q9BVJ7 150 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 CLPBQ9H078 707 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 ABCG8Q9H221 673 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 LZTFL1Q9NQ48 299 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 MRPL40Q9NQ50 206 aaKnown RBP13.69□□□□□ -0.22
SHMT2-219ENST00000555563 PHPT1Q9NRX4 125 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-219ENST00000555563 RSPH14Q9UHP6 348 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 NEUROG3Q9Y4Z2 214 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 U3KQA8 63 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 PTPRBP23467 1997 aa13.69□□□□□ -0.22
SHMT2-219ENST00000555563 LMO7DNF2Z398 122 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 TPP1O14773 563 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 SLC4A1P02730 911 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 PTMAP06454 111 aaKnown RBP13.68□□□□□ -0.22
SHMT2-219ENST00000555563 PROS1P07225 676 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 KELP23276 732 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 ACP1P24666 158 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 TEAD1P28347 426 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 WNT3AP56704 352 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 KLF1Q13351 362 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-219ENST00000555563 ZCCHC8Q6NZY4 707 aaKnown RBP13.68□□□□□ -0.22
SHMT2-219ENST00000555563 DARS2Q6PI48 645 aaKnown RBP13.68□□□□□ -0.22
SHMT2-219ENST00000555563 ZNF662Q6ZS27 426 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 ZNF765Q7L2R6 523 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 FSTL5Q8N475 847 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-219ENST00000555563 FAM181AQ8N9Y4 354 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 GORASP1Q9BQQ3 440 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 GBA3Q9H227 469 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 FAM153AQ9UHL3 310 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 TRHDEQ9UKU6 1024 aa13.68□□□□□ -0.22
SHMT2-219ENST00000555563 ZNF711Q9Y462 761 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms