RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PLD4Q96BZ4 506 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CEP295NLQ96MC4 621 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CLSTN3Q9BQT9 956 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 TRMOQ9BU70 441 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 ERVK-6Q9BXR3 956 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 ANKRD12Q6UB98 2062 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 UBXN8O00124 270 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CBX4O00257 560 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 PQBP1O60828 265 aaKnown RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 SMIM24O75264 130 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 MTHFD2P13995 350 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 HOXB8P17481 243 aaPredicted RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CDH13P55290 713 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 PDAP1Q13442 181 aaKnown RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 RFTN1Q14699 578 aaPredicted RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 SETMARQ53H47 684 aaPredicted RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 GLT6D1Q7Z4J2 308 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 GATA6Q92908 595 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 TDRD1Q9BXT4 1180 aaKnown RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 POPDC3Q9HBV1 291 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 SCUBE2Q9NQ36 999 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 AGO1Q9UL18 857 aaKnown RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 MED16Q9Y2X0 877 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 BACE2Q9Y5Z0 518 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 UBA6A0AVT1 1052 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 LRRC14BA6NHZ5 514 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 UBDO15205 165 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 SIX3O95343 332 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 F11P03951 625 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PEX2P28328 305 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 HTRA3P83110 453 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 MS4A2Q01362 244 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 ILF2Q12905 390 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 ZNF177Q13360 481 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 TAF1AQ15573 450 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 SFT2D3Q587I9 215 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 CAPRIN2Q6IMN6 1127 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PDSS2Q86YH6 399 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 RNF168Q8IYW5 571 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PTGR2Q8N8N7 351 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 GDPD5Q8WTR4 605 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 TMA16Q96EY4 203 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 TRPC7Q9HCX4 862 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 INTS10Q9NVR2 710 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PCDHGC4Q9Y5F7 938 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 C2orf78A6NCI8 922 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PPP6CO00743 305 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 MT-CO1P00395 513 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 GNRH1P01148 92 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 FMO4P31512 558 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 CDKN1CP49918 316 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 SH3BP2P78314 561 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 PTK2BQ14289 1009 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 SQLEQ14534 574 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 UGT3A2Q3SY77 523 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 REM2Q8IYK8 340 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 LPGAT1Q92604 370 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 C3orf30Q96M34 536 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 ATOH8Q96SQ7 321 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 CWH43Q9H720 699 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 TRPM5Q9NZQ8 1165 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 AFF4Q9UHB7 1163 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 TBC1D30Q9Y2I9 924 aa18.5■□□□□ 0.55
PRPF40B-208ENST00000548436 A0A1B0GVM2 712 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 ATP6AP2A0A1C7CYW4 349 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 ATP6AP2O75787 350 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 HDCP19113 662 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 ARF5P84085 180 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 FLOT2Q14254 428 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 FASTKQ14296 549 aaKnown RBP18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 PTPRRQ15256 657 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 PFKFB4Q16877 469 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 ADGRF1Q5T601 910 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 RNF219Q5W0B1 726 aaPredicted RBP18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 CXorf57Q6NSI4 855 aaKnown RBP18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 PAQR3Q6TCH7 311 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 LARP4Q71RC2 724 aaKnown RBP eCLIP18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 CHST9Q7L1S5 443 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 DEFB128Q7Z7B8 93 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 SNX31Q8N9S9 440 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 RHEBL1Q8TAI7 183 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 IGSF21Q96ID5 467 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 DLGAP2Q9P1A6 1054 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 IKZF3Q9UKT9 509 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 FAM50BQ9Y247 325 aa18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 ARIH1Q9Y4X5 557 aaPredicted RBP18.49■□□□□ 0.55
PRPF40B-208ENST00000548436 PLXNA4Q9HCM2 1894 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 PSMD12O00232 456 aaPredicted RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 RHOBTB1O94844 696 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CDK14O94921 469 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CD160O95971 181 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 LINGO3P0C6S8 592 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 PLD1Q13393 1074 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 AGKQ53H12 422 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 KIAA1841Q6NSI8 718 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 AFTPHQ6ULP2 937 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 LINGO4Q6UY18 593 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 LPCAT1Q8NF37 534 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms