RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 FFAR3O14843 346 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 GPR42O15529 346 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 LLGL2Q6P1M3 1020 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ZNF540Q8NDQ6 660 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 CSGALNACT1Q8TDX6 532 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 COL20A1Q9P218 1284 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 SERPINB7O75635 380 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 CCNDBP1O95273 360 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ZNHIT3Q15649 155 aaPredicted RBP12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ALFQ53S48 1182 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 FAM46CQ5VWP2 391 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ANKRD22Q5VYY1 191 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ZNF57Q68EA5 555 aaPredicted RBP12.52□□□□□ -0.41
COL4A6-209ENST00000545689 PMF1Q6P1K2 205 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 IKBIPQ70UQ0 350 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 DSELQ8IZU8 1212 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 MCRS1Q96EZ8 462 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 PANX1Q96RD7 426 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ZNF607Q96SK3 696 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 TTPALQ9BTX7 342 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 ZDHHC18Q9NUE0 388 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 GTF2A1LQ9UNN4 478 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 POLR3HQ9Y535 204 aaPredicted RBP12.52□□□□□ -0.41
COL4A6-209ENST00000545689 RIPK3Q9Y572 518 aa12.52□□□□□ -0.41
COL4A6-209ENST00000545689 PRMT5O14744 637 aaPredicted RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SYN3O14994 580 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 IL12RB1P42701 662 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SEMA5AQ13591 1074 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 MTX3Q5HYI7 312 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 PRAMEF19Q5SWL8 479 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 DOK6Q6PKX4 331 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 OR2T12Q8NG77 320 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 LENG1Q96BZ8 264 aaPredicted RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 NUSAP1Q9BXS6 441 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 WDR12Q9GZL7 423 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 UNC93B1Q9H1C4 597 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 APOBEC3GQ9HC16 384 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 ZFP14Q9HCL3 533 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 LINC00854A0A1B0GVQ3 168 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 G3V2T6 193 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 MGRN1O60291 552 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 ARHGAP36Q6ZRI8 547 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 PHF10Q8WUB8 498 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 VPS35Q96QK1 796 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 NPAS2Q99743 824 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 FZD8Q9H461 694 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 ERGIC3Q9Y282 383 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SUV39H1O43463 412 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 STAT5AP42229 794 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 POLR2JP52435 117 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SMAD3P84022 425 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 ZNF567Q8N184 647 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 PTPRJQ12913 1337 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 GRM6O15303 877 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 NEK5Q6P3R8 708 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 GRIN3AQ8TCU5 1115 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 DQX1Q8TE96 717 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 C2orf15Q8WU43 125 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SKA1Q96BD8 255 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 RNF19AQ9NV58 838 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 NPEPPSL1A6NEC2 478 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 GPIP06744 558 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 ASMTP46597 345 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 DGKZQ13574 1117 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 RAET1GQ6H3X3 334 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 GK5Q6ZS86 529 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 HIPK1Q86Z02 1210 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 TIMMDC1Q9NPL8 285 aa12.51□□□□□ -0.41
COL4A6-209ENST00000545689 SAMHD1Q9Y3Z3 626 aaKnown RBP12.51□□□□□ -0.41
COL4A6-209ENST00000545689 TULP3O75386 442 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ALOX5P09917 674 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 OGNP20774 298 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 GNPDA1P46926 289 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 IDH2P48735 452 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PNLIPRP1P54315 467 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 CDH4P55283 916 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 OLR1P78380 273 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 DPYSL2Q16555 572 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 MPPE1Q53F39 396 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ZDHHC24Q6UX98 284 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ZC3H7AQ8IWR0 971 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PDPRQ8NCN5 879 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 MAGEH1Q9H213 219 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ETAA1Q9NY74 926 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ATP6V1HQ9UI12 483 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PIPSLA2A3N6 862 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 GPR25O00155 361 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 SEC24AO95486 1093 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 BRCC3P46736 316 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 USP46P62068 366 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 FASTKD3Q14CZ7 662 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 ZBTB2Q8N680 514 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 TWIST2Q8WVJ9 160 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 AP3S1Q92572 193 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 NACC2Q96BF6 587 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 XRN1Q8IZH2 1706 aaKnown RBP12.5□□□□□ -0.41
COL4A6-209ENST00000545689 CBFA2T3O75081 653 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 FAM155BO75949 473 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 PGM3O95394 542 aa12.5□□□□□ -0.41
COL4A6-209ENST00000545689 SLURP2P0DP57 97 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms