RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	LYSMD1	Q96S90	227 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SEMA3C	Q99985	751 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PACSIN1	Q9BY11	444 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NT5M	Q9NPB1	228 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PHPT1	Q9NRX4	125 aa	Predicted RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	THSD1	Q9NS62	852 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GULP1	Q9UBP9	304 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SLC17A4	Q9Y2C5	497 aa		13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FASN	P49327	2511 aa	Known RBP	13.1	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCDC187	A0A096LP49	1063 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NUDT21	O43809	227 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PRL	P01236	227 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCNB1	P14635	433 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF30	P17039	623 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MX2	P20592	715 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KDELR1	P24390	212 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCKBR	P32239	447 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ARHGAP25	P42331	645 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RPL26	P61254	145 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCL7	P80098	99 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CDK3	Q00526	305 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZFP36L1	Q07352	338 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	EIF3I	Q13347	325 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NR1D2	Q14995	579 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PTPRR	Q15256	657 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	C14orf28	Q4W4Y0	310 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ADAMTSL4	Q6UY14	1074 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475		Q6ZVL8	140 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	USP45	Q70EL2	814 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF438	Q7Z4V0	828 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TSPAN33	Q86UF1	283 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HEATR4	Q86WZ0	1026 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NRROS	Q86YC3	692 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NDUFAF2	Q8N183	169 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FAM46D	Q8NEK8	389 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCL4L1	Q8NHW4	92 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RNF157	Q96PX1	679 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TDRD1	Q9BXT4	1180 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ABCG8	Q9H221	673 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LRRN3	Q9H3W5	708 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CYP4F12	Q9HCS2	524 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SIRPG	Q9P1W8	387 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CTTNBP2NL	Q9P2B4	639 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RPL26L1	Q9UNX3	145 aa	Known RBP	13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ST14	Q9Y5Y6	855 aa		13.09	□□□□□ -0.31
SEMA4D-223	ENST00000540475	BSN	Q9UPA5	3926 aa		13.08	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TEX51	A0A1B0GUA7	166 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	C3orf70	A6NLC5	250 aa	Predicted RBP	13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475		D6RAR5	112 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CBFA2T2	O43439	604 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	IVL	P07476	585 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	KRT10	P13645	584 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	RBMS1	P29558	406 aa	Known RBP	13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	GBE1	Q04446	702 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CCDC173	Q0VFZ6	552 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ARHGEF7	Q14155	803 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	C3orf38	Q5JPI3	329 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	SLC9A4	Q6AI14	798 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	TAF8	Q7Z7C8	310 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	VSTM4	Q8IW00	320 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	NRSN1	Q8IZ57	195 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ARL14	Q8N4G2	192 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	PAF1	Q8N7H5	531 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	SLC35G2	Q8TBE7	412 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	RAPGEF5	Q92565	580 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	COX14	Q96I36	57 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	LGMN	Q99538	433 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CHP1	Q99653	195 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ABHD10	Q9NUJ1	306 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	SPATS2L	Q9NUQ6	558 aa	Known RBP	13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	HAUS2	Q9NVX0	235 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	DTL	Q9NZJ0	730 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ACSL6	Q9UKU0	697 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	DNPEP	Q9ULA0	475 aa		13.08	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CFAP46	Q8IYW2	2715 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ATXN7	O15265	892 aa	Predicted RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	FGF1	P05230	155 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	RPLP0	P05388	317 aa	Known RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	HLA-DQB2	P05538	268 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	PYGL	P06737	847 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	MMP2	P08253	660 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	ITGA2B	P08514	1039 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CTPS1	P17812	591 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	SSR1	P43307	286 aa	Known RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	STC1	P52823	247 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	UCN	P55089	124 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	IFI35	P80217	286 aa	Predicted RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	B4GALNT1	Q00973	533 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	DSC2	Q02487	901 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	PPID	Q08752	370 aa	Known RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	NIPAL4	Q0D2K0	466 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	COL9A2	Q14055	689 aa	Predicted RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	CLPP	Q16740	277 aa	Predicted RBP	13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	LRRC38	Q5VT99	294 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	LRRC66	Q68CR7	880 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	RFLNA	Q6ZTI6	216 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	GPR155	Q7Z3F1	870 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	SPRED1	Q7Z699	444 aa		13.07	□□□□□ -0.32
SEMA4D-223	ENST00000540475	B3GNT8	Q7Z7M8	397 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms