RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SEC61BP60468 96 aaKnown RBP3.97□□□□□ -1.77
CD44-217ENST00000525348 COL28A1Q2UY09 1125 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 FAM69AQ5T7M9 428 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 NAA35Q5VZE5 725 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 PLEKHA7Q6IQ23 1121 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 GFRALQ6UXV0 394 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 FOXL2NBQ6ZUU3 175 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 TMEM219Q86XT9 240 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 ZNF34Q8IZ26 560 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 DSELQ8IZU8 1212 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 SPATA6LQ8N4H0 392 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 SLC20A1Q8WUM9 679 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 EVI5LQ96CN4 794 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 SLC41A2Q96JW4 573 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 PPP1R13BQ96KQ4 1090 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 TTC14Q96N46 770 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 FAM110AQ9BQ89 295 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 H2AFJQ9BTM1 129 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 AGXT2Q9BYV1 514 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 USP44Q9H0E7 712 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 PPP1R3EQ9H7J1 279 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 GPR108Q9NPR9 543 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 HINT3Q9NQE9 182 aaKnown RBP3.97□□□□□ -1.77
CD44-217ENST00000525348 KCND2Q9NZV8 630 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 MPP6Q9NZW5 540 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 VDAC3Q9Y277 283 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 CYP46A1Q9Y6A2 500 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 TSPAN4O14817 238 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 LINC01565O15544 149 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 TPD52L2O43399 206 aaKnown RBP3.96□□□□□ -1.78
CD44-217ENST00000525348 LMX1BO60663 402 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 S1PR1P21453 382 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 GNAQP50148 359 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 SORDQ00796 357 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 NAE1Q13564 534 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 CTF1Q16619 201 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 STPG1Q5TH74 334 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 SLC46A3Q7Z3Q1 461 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 EXOC3L1Q86VI1 746 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 SFR1Q86XK3 245 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 ESX1Q8N693 406 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 CADM4Q8NFZ8 388 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 BBS10Q8TAM1 723 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 NDST4Q9H3R1 872 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 BRF2Q9HAW0 419 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 PCDH9Q9HC56 1237 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 KLHL1Q9NR64 748 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 TERF2IPQ9NYB0 399 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 NAALADL1Q9UQQ1 740 aa3.96□□□□□ -1.78
CD44-217ENST00000525348 TIPRLO75663 272 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 IRF1P10914 325 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 ITGA2P17301 1181 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 TCEA1P23193 301 aaKnown RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 ABCD1P33897 745 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 GABRB2P47870 512 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 ACSM2AQ08AH3 577 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 FGFBP1Q14512 234 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 RBBP5Q15291 538 aaKnown RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 ZNF280DQ6N043 979 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 RGMBQ6NW40 437 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 FAM122CQ6P4D5 195 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 PQLC2Q6ZP29 291 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 SLC9B2Q86UD5 537 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 WDR63Q8IWG1 891 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 C1orf87Q8N0U7 546 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 NOC3LQ8WTT2 800 aaKnown RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 ABTB1Q969K4 478 aaPredicted RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 RHBDF1Q96CC6 855 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 NR1H4Q96RI1 486 aaPredicted RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 PAIP1Q9H074 479 aaKnown RBP3.95□□□□□ -1.78
CD44-217ENST00000525348 WASH6PQ9NQA3 447 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 PCDHB16Q9NRJ7 776 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 SLC6A13Q9NSD5 602 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 TMEM30AQ9NV96 361 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 MCM9Q9NXL9 1143 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 PDP2Q9P2J9 529 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 CEPT1Q9Y6K0 416 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 CAPN7Q9Y6W3 813 aa3.95□□□□□ -1.78
CD44-217ENST00000525348 GREB1LQ9C091 1923 aaPredicted RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 USP17L23D6RBM5 183 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 SP1P08047 785 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CDH1P12830 882 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 MCM3P25205 808 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 EPHA8P29322 1005 aaPredicted RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 CORO1AP31146 461 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 CDAP32320 146 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CLCN3P51790 818 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 CLCNKAP51800 687 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 TROAPQ12815 778 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 ZRSR2Q15696 482 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 KCNT1Q5JUK3 1230 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 KRTAP5-11Q6L8G4 156 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 DSTYKQ6XUX3 929 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 MARK2Q7KZI7 788 aaKnown RBP3.94□□□□□ -1.78
CD44-217ENST00000525348 DSG4Q86SJ6 1040 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 TMPRSS12Q86WS5 348 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 OTUD6BQ8N6M0 293 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 MAB21L3Q8N8X9 362 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 NFKBIDQ8NI38 313 aa3.94□□□□□ -1.78
CD44-217ENST00000525348 HMGCLL1Q8TB92 370 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms