RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 RSBN1Q5VWQ0 802 aaPredicted RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 FBXL19Q6PCT2 694 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 OOSP2Q86WS3 158 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 CPSF7Q8N684 471 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 OR2T12Q8NG77 320 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 TWIST2Q8WVJ9 160 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 RNF208Q9H0X6 261 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 EBF3Q9H4W6 596 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SPG21Q9NZD8 308 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 FZD10Q9ULW2 581 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 AQP1P29972 269 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 FAM110CQ1W6H9 321 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 INO80DQ53TQ3 878 aaPredicted RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 INTS6LQ5JSJ4 861 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 ZNF549Q6P9A3 640 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 C6orf89Q6UWU4 347 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 OFCC1Q8IZS5 231 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 KRT78Q8N1N4 520 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 CBR4Q8N4T8 237 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 WDR60Q8WVS4 1066 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 PSMG2Q969U7 264 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 REXO5Q96IC2 774 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 HMG20AQ9NP66 347 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 PIGVQ9NUD9 493 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 TMEM39AQ9NV64 488 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 KLHL20Q9Y2M5 609 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SAMHD1Q9Y3Z3 626 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 KRT87PA6NCN2 255 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 IQCF5A8MTL0 148 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 AGRPO00253 132 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 KPNA4O00629 521 aaPredicted RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 RFXANKO14593 260 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 MFN2O95140 757 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 NDST3O95803 873 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SPATA31D3P0C874 917 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 CCNCP24863 283 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 TRAF3Q13114 568 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 PHKG1Q16816 387 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 GLYATQ6IB77 296 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SPATA31D4Q6ZUB0 917 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 VN1R5Q7Z5H4 357 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 ZC3H7AQ8IWR0 971 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 PAWRQ96IZ0 340 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 C12orf42Q96LP6 360 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 BBS4Q96RK4 519 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 CCDC28BQ9BUN5 200 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 ACAT2Q9BWD1 397 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 KLHL28Q9NXS3 571 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 KLHL3Q9UH77 587 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 C9IYK1 514 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 UBXN8O00124 270 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 RPP40O75818 363 aaKnown RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 ALDH1A2O94788 518 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 C1RP00736 705 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CCNHP51946 323 aaPredicted RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 GJA9P57773 515 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 EPS8Q12929 822 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PRKD1Q15139 912 aaPredicted RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 ZNF540Q8NDQ6 660 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CD101Q93033 1021 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CORO1BQ9BR76 489 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 NUAK2Q9H093 628 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 SLC25A51Q9H1U9 297 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PRKAG3Q9UGI9 489 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 FETUBQ9UGM5 382 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 TBC1D30Q9Y2I9 924 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 MYH6P13533 1939 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 MATN3O15232 486 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 DBTP11182 482 aaKnown RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 RHOQP17081 205 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 HPCAL1P37235 193 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CYP4F2P78329 520 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 XIAPP98170 497 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PRKCQQ04759 706 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 ENPEPQ07075 957 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CYP4F3Q08477 520 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 SLC9B1Q4ZJI4 515 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 XKR6Q5GH73 641 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PAOXQ6QHF9 649 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 MTSS1LQ765P7 747 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 ZC3H3Q8IXZ2 948 aaKnown RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 CNTD1Q8N815 330 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PROX1Q92786 737 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 HOPXQ9BPY8 73 aaPredicted RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 FBXW11Q9UKB1 542 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 CCDC189A1A4V9 331 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 ELNP15502 786 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 POLR2EP19388 210 aaKnown RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 SLC25A11Q02978 314 aaKnown RBP12.66□□□□□ -0.38
USP53-209ENST00000514665 TXNDC11Q6PKC3 985 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 UBR7Q8N806 425 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 RNFT2Q96EX2 444 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 APOLD1Q96LR9 279 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 RHOBTB2Q9BYZ6 727 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 PCDHAC1Q9H158 963 aa12.66□□□□□ -0.38
USP53-209ENST00000514665 ACTR3P61158 418 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 KIAA0408Q6ZU52 694 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 HFE2Q6ZVN8 426 aa12.65□□□□□ -0.38
USP53-209ENST00000514665 CTU1Q7Z7A3 348 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms